Variant report

No.	Distal block	Cell Line	Cell type
1	chr14:77654298..77656705-chr14:77661516..77663425,2	MCF-7	breast:
2	chr14:77662377..77664073-chr14:77667716..77669766,2	MCF-7	breast:
3	chr14:77662764..77664423-chr14:77667096..77668676,2	K562	blood:
4	chr14:77532229..77534933-chr14:77661269..77663190,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000201384	Chromatin interaction

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11159252	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11620648	0.88[YRI][hapmap];0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11621596	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11628257	1.00[ASN][1000 genomes]
rs11629219	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2110909	0.86[EUR][1000 genomes]
rs2287377	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2655997	0.84[YRI][hapmap]
rs4243654	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4903561	0.85[EUR][1000 genomes]
rs60803895	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61990332	1.00[ASN][1000 genomes]
rs61991597	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61991600	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7144771	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7147670	0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs8009449	1.00[ASN][1000 genomes]
rs8011512	0.84[YRI][hapmap];0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs8017343	1.00[ASN][1000 genomes]
rs8018063	1.00[ASN][1000 genomes]
rs8018183	1.00[ASN][1000 genomes]
rs978607	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431017	chr14:76938089-77854647	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	107 gene(s)	inside rSNPs	diseases
2	nsv832834	chr14:77554987-77724357	Bivalent Enhancer Weak transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:77654000-77665200	Weak transcription	Brain Germinal Matrix	brain
2	chr14:77654000-77666800	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr14:77654000-77670000	Weak transcription	Brain Angular Gyrus	brain
4	chr14:77654200-77709400	Weak transcription	Esophagus	oesophagus
5	chr14:77654600-77679400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr14:77655000-77664400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr14:77657400-77667400	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr14:77662000-77674400	Weak transcription	Brain Substantia Nigra	brain
9	chr14:77662200-77666000	Weak transcription	Fetal Brain Female	brain
10	chr14:77662400-77669800	Weak transcription	Brain Anterior Caudate	brain
11	chr14:77662400-77669800	Weak transcription	Brain Cingulate Gyrus	brain
12	chr14:77662600-77664400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr14:77662800-77663200	Weak transcription	Fetal Brain Male	brain
14	chr14:77662800-77669800	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr14:77662800-77671600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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