Variant report

Variant	rs11629219
Chromosome Location	chr14:77654928-77654929
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11159252	1.00[ASN][1000 genomes]
rs11620648	0.99[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11621596	0.99[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11625327	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11627977	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11628257	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17812088	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs60803895	0.99[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61990332	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61991597	1.00[ASN][1000 genomes]
rs61991600	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7144771	0.99[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7147670	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7150602	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs8009449	1.00[ASN][1000 genomes]
rs8011512	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs8017343	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8018063	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8018183	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431017	chr14:76938089-77854647	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	107 gene(s)	inside rSNPs	diseases
2	nsv832834	chr14:77554987-77724357	Bivalent Enhancer Weak transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:77649000-77655000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr14:77651400-77655000	Enhancers	Colonic Mucosa	Colon
3	chr14:77651800-77659000	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr14:77653600-77662000	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr14:77653800-77655800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr14:77654000-77665200	Weak transcription	Brain Germinal Matrix	brain
7	chr14:77654000-77666800	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr14:77654000-77670000	Weak transcription	Brain Angular Gyrus	brain
9	chr14:77654200-77655800	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr14:77654200-77655800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr14:77654200-77661800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr14:77654200-77709400	Weak transcription	Esophagus	oesophagus
13	chr14:77654400-77656000	Weak transcription	Lung	lung
14	chr14:77654400-77659000	Weak transcription	Fetal Brain Male	brain
15	chr14:77654600-77659600	Weak transcription	Fetal Brain Female	brain
16	chr14:77654600-77679400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr14:77654800-77655800	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr14:77654800-77656200	Enhancers	Primary monocytes fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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