Variant report

Variant	rs61991600
Chromosome Location	chr14:77669597-77669598
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11159252	1.00[ASN][1000 genomes]
rs11620648	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11621596	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11627977	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11628257	1.00[ASN][1000 genomes]
rs11629219	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2542824	0.89[EUR][1000 genomes]
rs421146	0.91[EUR][1000 genomes]
rs60803895	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61990332	1.00[ASN][1000 genomes]
rs61991597	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7144771	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7147670	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8009449	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8011512	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8017343	1.00[ASN][1000 genomes]
rs8018063	1.00[ASN][1000 genomes]
rs8018183	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431017	chr14:76938089-77854647	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	107 gene(s)	inside rSNPs	diseases
2	nsv832834	chr14:77554987-77724357	Bivalent Enhancer Weak transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:77654000-77670000	Weak transcription	Brain Angular Gyrus	brain
2	chr14:77654200-77709400	Weak transcription	Esophagus	oesophagus
3	chr14:77654600-77679400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr14:77662000-77674400	Weak transcription	Brain Substantia Nigra	brain
5	chr14:77662400-77669800	Weak transcription	Brain Anterior Caudate	brain
6	chr14:77662400-77669800	Weak transcription	Brain Cingulate Gyrus	brain
7	chr14:77662800-77669800	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr14:77662800-77671600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr14:77666000-77670200	Weak transcription	Brain Germinal Matrix	brain
10	chr14:77667200-77669800	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr14:77667400-77670400	Enhancers	Pancreatic Islets	Pancreatic Islet
12	chr14:77667600-77669800	Weak transcription	Fetal Brain Female	brain
13	chr14:77667800-77671200	Enhancers	Fetal Brain Male	brain
14	chr14:77668400-77669800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr14:77668600-77671000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr14:77668800-77669800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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