Variant report

Variant	rs4243771
Chromosome Location	chr1:85276032-85276033
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10782529	0.81[ASN][1000 genomes]
rs10873658	0.98[AFR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11161454	0.87[MKK][hapmap];1.00[YRI][hapmap]
rs11161462	0.81[MKK][hapmap]
rs11161464	0.84[ASW][hapmap]
rs2892844	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4256829	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4271231	0.92[ASN][1000 genomes]
rs9662096	0.84[MKK][hapmap]
rs9727725	0.84[ASW][hapmap];0.86[MKK][hapmap]
rs9729018	0.84[MKK][hapmap]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85264000-85295600	Weak transcription	NHEK	skin
2	chr1:85266400-85287200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr1:85276000-85276200	Enhancers	Brain Anterior Caudate	brain
4	chr1:85276000-85276400	Enhancers	Fetal Brain Male	brain
5	chr1:85276000-85276600	Enhancers	Cortex derived primary cultured neurospheres	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links