Variant report

Variant	rs4244526
Chromosome Location	chr11:26698633-26698634
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10742153	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10742154	1.00[EUR][1000 genomes]
rs10767567	0.85[ASW][hapmap];0.84[LWK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs1545434	1.00[EUR][1000 genomes]
rs4293085	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs4462290	0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4923376	0.86[YRI][hapmap];0.89[AFR][1000 genomes]
rs4923377	1.00[EUR][1000 genomes]
rs59744235	1.00[EUR][1000 genomes]
rs73436389	1.00[EUR][1000 genomes]
rs73438407	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044544	chr11:26506962-26967285	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv916187	chr11:26576875-27328603	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26688600-26702400	Weak transcription	Fetal Intestine Small	intestine
2	chr11:26695200-26701800	Weak transcription	Fetal Intestine Large	intestine
3	chr11:26697000-26699800	Enhancers	NHEK	skin
4	chr11:26697800-26698800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr11:26698400-26699000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr11:26698400-26699800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr11:26698400-26699800	Enhancers	HMEC	breast
8	chr11:26698600-26699200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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