Variant report

Variant	rs10767567
Chromosome Location	chr11:26701172-26701173
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1012552	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs10430848	0.90[JPT][hapmap]
rs10734379	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs10734381	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs10734382	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs10742153	0.88[AFR][1000 genomes]
rs10767563	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs10835006	0.83[CHB][hapmap];0.85[CHD][hapmap]
rs10835056	0.91[JPT][hapmap]
rs11029641	0.81[CHB][hapmap]
rs12420230	0.89[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1389455	0.81[CHB][hapmap]
rs211066	0.91[CHB][hapmap];1.00[CHD][hapmap]
rs293931	0.81[CHB][hapmap]
rs293935	0.81[CHB][hapmap]
rs293954	0.81[CHB][hapmap]
rs293956	0.81[CHB][hapmap]
rs293958	0.81[CHB][hapmap]
rs293959	0.88[CHB][hapmap]
rs293960	0.81[CHB][hapmap]
rs293963	0.81[CHB][hapmap]
rs293999	0.81[CHB][hapmap]
rs294006	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs3802755	0.90[JPT][hapmap]
rs4129736	0.91[CHB][hapmap]
rs4244526	0.85[ASW][hapmap];0.84[LWK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs4254034	0.91[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs4278475	0.81[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs4293085	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4462290	0.95[YRI][hapmap];0.88[AFR][1000 genomes]
rs4576775	0.81[CHB][hapmap]
rs4922765	0.91[CHB][hapmap];0.90[CHD][hapmap]
rs4922766	0.91[CHB][hapmap]
rs4923376	0.81[CHB][hapmap];0.81[JPT][hapmap];0.86[YRI][hapmap];0.84[AFR][1000 genomes]
rs7101498	0.91[CHB][hapmap]
rs7110072	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs7938949	0.91[CHB][hapmap];0.90[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044544	chr11:26506962-26967285	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv916187	chr11:26576875-27328603	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26688600-26702400	Weak transcription	Fetal Intestine Small	intestine
2	chr11:26695200-26701800	Weak transcription	Fetal Intestine Large	intestine
3	chr11:26699800-26701200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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