Variant report

Variant	rs4254034
Chromosome Location	chr11:26671361-26671362
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:26318438..26319350-chr11:26670793..26671982,7	MCF-7	breast:
2	chr11:26669136..26671365-chr14:104584975..104586845,2	MCF-7	breast:
3	chr11:26544159..26545613-chr11:26671003..26672359,7	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1012552	0.81[JPT][hapmap];0.80[ASN][1000 genomes]
rs10430848	0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs10734379	0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs10734381	0.90[JPT][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10734382	0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs10767563	0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs10767567	0.91[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs10835006	0.92[CHB][hapmap]
rs10835056	0.91[JPT][hapmap]
rs12420230	0.91[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs211066	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs294006	0.81[JPT][hapmap];0.80[ASN][1000 genomes]
rs3802755	0.91[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs395877	0.80[ASN][1000 genomes]
rs4129736	1.00[CHB][hapmap]
rs4278475	0.90[JPT][hapmap]
rs4293085	0.92[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs4562780	0.83[ASN][1000 genomes]
rs4922765	1.00[CHB][hapmap]
rs4922766	1.00[CHB][hapmap]
rs4923371	0.80[ASN][1000 genomes]
rs4923376	0.82[JPT][hapmap]
rs6416050	0.83[ASN][1000 genomes]
rs7101498	1.00[CHB][hapmap]
rs7110072	0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs7121838	0.90[CHB][hapmap]
rs72879841	0.80[ASN][1000 genomes]
rs7480145	0.80[ASN][1000 genomes]
rs7938949	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044544	chr11:26506962-26967285	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1050121	chr11:26532655-26675303	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv540974	chr11:26532655-26675303	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv916187	chr11:26576875-27328603	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv897141	chr11:26659406-26674033	Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv467779	chr11:26661690-26674033	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv553908	chr11:26661690-26674033	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26645200-26671600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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