Variant report

Variant	rs7121838
Chromosome Location	chr11:26672944-26672945
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs1012552	0.90[CHB][hapmap]
rs10734379	0.90[CHB][hapmap]
rs10734380	0.92[AFR][1000 genomes]
rs10734381	0.90[CHB][hapmap]
rs10734382	0.90[CHB][hapmap]
rs10742149	0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs10742151	0.82[ASN][1000 genomes]
rs10767556	0.82[CHB][hapmap];0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs10767563	0.90[CHB][hapmap]
rs10835005	0.91[ASN][1000 genomes]
rs10835006	0.82[CHB][hapmap];0.93[JPT][hapmap];0.86[MEX][hapmap];0.93[ASN][1000 genomes]
rs10835007	0.87[JPT][hapmap]
rs10835019	0.88[GIH][hapmap];0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs10835021	0.89[CHB][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs11029629	0.87[JPT][hapmap]
rs11029641	0.90[CHB][hapmap]
rs1389455	0.90[CHB][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap]
rs1567351	0.87[JPT][hapmap]
rs211066	0.90[CHB][hapmap]
rs2298	0.94[JPT][hapmap];0.81[LWK][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs28622575	0.82[ASN][1000 genomes]
rs293930	0.89[CHB][hapmap]
rs293931	0.90[CHB][hapmap]
rs293935	0.90[CHB][hapmap]
rs293954	0.90[CHB][hapmap]
rs293956	0.90[CHB][hapmap]
rs293958	0.90[CHB][hapmap]
rs293959	0.88[CHB][hapmap]
rs293960	0.90[CHB][hapmap]
rs293963	0.90[CHB][hapmap]
rs293999	0.90[CHB][hapmap]
rs294006	0.90[CHB][hapmap]
rs3802755	0.89[CHB][hapmap]
rs4129736	0.86[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4254034	0.90[CHB][hapmap]
rs4278475	0.90[CHB][hapmap]
rs4390308	0.94[JPT][hapmap]
rs4447134	0.80[ASN][1000 genomes]
rs4576775	0.90[CHB][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs4603259	0.94[JPT][hapmap]
rs4922765	0.86[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4922766	0.86[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4923376	0.90[CHB][hapmap]
rs6484233	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6484234	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7101498	0.86[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7110072	0.90[CHB][hapmap]
rs7928737	0.94[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs7930308	0.87[JPT][hapmap]
rs7931282	0.87[JPT][hapmap]
rs7934757	0.94[JPT][hapmap]
rs7936525	0.94[JPT][hapmap]
rs7938949	0.86[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7948089	0.94[JPT][hapmap];0.88[YRI][hapmap];0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044544	chr11:26506962-26967285	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1050121	chr11:26532655-26675303	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv540974	chr11:26532655-26675303	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv916187	chr11:26576875-27328603	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv897141	chr11:26659406-26674033	Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv467779	chr11:26661690-26674033	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv553908	chr11:26661690-26674033	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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