Variant report

Variant	rs10835006
Chromosome Location	chr11:26616520-26616521
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10742149	0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs10742151	0.82[ASN][1000 genomes]
rs10767556	0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs10767567	0.83[CHB][hapmap];0.85[CHD][hapmap]
rs10835005	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10835007	0.94[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs10835010	0.84[AFR][1000 genomes]
rs10835019	0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs10835021	0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs11029627	0.89[AFR][1000 genomes]
rs11029629	0.94[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs11029630	0.84[AFR][1000 genomes]
rs12420230	0.83[CHB][hapmap]
rs1389455	0.86[JPT][hapmap]
rs1567351	0.94[JPT][hapmap];0.95[YRI][hapmap]
rs1848563	0.91[LWK][hapmap];0.89[MKK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs211066	0.92[CHB][hapmap];0.85[CHD][hapmap]
rs2298	0.88[JPT][hapmap]
rs28622575	0.82[ASN][1000 genomes]
rs4129736	0.92[CHB][hapmap];0.93[JPT][hapmap];0.93[ASN][1000 genomes]
rs4254034	0.92[CHB][hapmap]
rs4293085	0.83[CHB][hapmap]
rs4390308	0.88[JPT][hapmap]
rs4447134	0.82[ASN][1000 genomes]
rs4576775	0.87[JPT][hapmap]
rs4603259	0.88[JPT][hapmap]
rs4922765	0.92[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.87[MEX][hapmap];0.93[ASN][1000 genomes]
rs4922766	0.92[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs6484233	0.95[ASN][1000 genomes]
rs6484234	0.93[ASN][1000 genomes]
rs7101498	0.92[CHB][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs7121838	0.82[CHB][hapmap];0.93[JPT][hapmap];0.86[MEX][hapmap]
rs7928737	0.88[JPT][hapmap]
rs7930308	0.94[JPT][hapmap];0.80[LWK][hapmap];0.89[MKK][hapmap];1.00[YRI][hapmap]
rs7931282	0.94[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs7934757	0.88[JPT][hapmap]
rs7936525	0.88[JPT][hapmap]
rs7938949	0.84[ASW][hapmap];0.92[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.96[MEX][hapmap];0.89[MKK][hapmap];0.88[TSI][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7948089	0.88[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044544	chr11:26506962-26967285	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1050121	chr11:26532655-26675303	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv540974	chr11:26532655-26675303	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv916187	chr11:26576875-27328603	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv975163	chr11:26609968-26620267	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26600400-26643000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr11:26603800-26623200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr11:26604000-26623600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr11:26607600-26635400	Weak transcription	Adipose Nuclei	Adipose
5	chr11:26610800-26619000	Weak transcription	Fetal Lung	lung
6	chr11:26614600-26617000	Enhancers	Placenta	Placenta
7	chr11:26616000-26617600	Enhancers	Fetal Intestine Large	intestine
8	chr11:26616000-26617600	Enhancers	Fetal Intestine Small	intestine

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