Variant report

Variant	rs7934757
Chromosome Location	chr11:26674513-26674514
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10430935	0.91[ASN][1000 genomes]
rs10734380	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10742149	0.81[JPT][hapmap]
rs10742152	0.82[ASN][1000 genomes]
rs10767556	0.82[JPT][hapmap]
rs10767559	0.92[ASN][1000 genomes]
rs10767562	0.92[ASN][1000 genomes]
rs10835006	0.88[JPT][hapmap]
rs10835007	0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs10835010	0.91[ASN][1000 genomes]
rs10835019	0.82[JPT][hapmap]
rs10835056	0.94[CHB][hapmap];0.94[CHD][hapmap]
rs11029627	0.91[ASN][1000 genomes]
rs11029629	0.81[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs11029630	0.91[ASN][1000 genomes]
rs1389455	0.88[JPT][hapmap]
rs1567351	0.89[CHB][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs1580669	0.92[ASN][1000 genomes]
rs1848563	0.83[CHB][hapmap];0.94[CHD][hapmap];0.84[GIH][hapmap];0.90[ASN][1000 genomes]
rs2298	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4129736	0.94[JPT][hapmap]
rs4344447	0.81[ASN][1000 genomes]
rs4390308	0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs4494265	0.87[ASN][1000 genomes]
rs4576775	0.88[JPT][hapmap]
rs4603259	0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4922765	0.94[JPT][hapmap];0.80[MEX][hapmap];0.89[MKK][hapmap]
rs4922766	0.94[JPT][hapmap]
rs7101498	0.94[JPT][hapmap];0.83[YRI][hapmap]
rs7111936	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7112236	0.87[ASN][1000 genomes]
rs7112532	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7112784	0.97[ASN][1000 genomes]
rs7121838	0.94[JPT][hapmap]
rs7928737	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7930308	0.89[CHB][hapmap];0.94[CHD][hapmap];0.84[GIH][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs7931282	0.83[CHB][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs7936525	0.89[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.97[TSI][hapmap];0.90[YRI][hapmap];0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7938949	0.94[JPT][hapmap]
rs7948089	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs925237	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044544	chr11:26506962-26967285	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1050121	chr11:26532655-26675303	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv540974	chr11:26532655-26675303	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv916187	chr11:26576875-27328603	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26673200-26676600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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