Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:26695454..26697214-chr11:26724438..26726286,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10430848	0.81[JPT][hapmap]
rs10734379	0.82[JPT][hapmap]
rs10734381	0.82[JPT][hapmap]
rs10734382	0.82[JPT][hapmap]
rs10767563	0.82[JPT][hapmap]
rs10767567	0.91[JPT][hapmap]
rs10835057	0.87[LWK][hapmap];0.86[YRI][hapmap];0.82[AFR][1000 genomes]
rs12420230	0.91[JPT][hapmap]
rs1567351	0.82[CHB][hapmap]
rs1848563	0.88[CHD][hapmap]
rs2298	0.94[CHB][hapmap];0.94[CHD][hapmap]
rs3802755	0.82[JPT][hapmap]
rs4254034	0.91[JPT][hapmap]
rs4278475	0.82[JPT][hapmap]
rs4293085	0.91[JPT][hapmap]
rs4298854	0.80[AFR][1000 genomes]
rs4390308	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs4603259	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs7110072	0.82[JPT][hapmap]
rs7928737	0.94[CHB][hapmap]
rs7930308	0.82[CHB][hapmap];0.88[CHD][hapmap]
rs7934757	0.94[CHB][hapmap];0.94[CHD][hapmap]
rs7936525	0.88[CHB][hapmap];0.94[CHD][hapmap]
rs7948089	0.94[CHB][hapmap];0.94[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044544	chr11:26506962-26967285	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv916187	chr11:26576875-27328603	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26688600-26702400	Weak transcription	Fetal Intestine Small	intestine
2	chr11:26695200-26701800	Weak transcription	Fetal Intestine Large	intestine
3	chr11:26696800-26697200	Active TSS	GM12878-XiMat	blood
4	chr11:26697000-26697200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr11:26697000-26697200	Flanking Active TSS	Liver	Liver
6	chr11:26697000-26697400	Enhancers	Rectal Smooth Muscle	rectum
7	chr11:26697000-26697800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr11:26697000-26699800	Enhancers	NHEK	skin

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