Variant report

Variant	rs10734381
Chromosome Location	chr11:26674033-26674034
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1012552	1.00[CHB][hapmap];0.90[JPT][hapmap];0.97[ASN][1000 genomes]
rs10430848	0.90[CHB][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10734379	0.85[ASW][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];1.00[ASN][1000 genomes]
rs10734382	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10742149	0.88[CHB][hapmap]
rs10767563	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10767567	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs10835019	0.81[CHB][hapmap]
rs10835021	1.00[CHB][hapmap]
rs10835056	0.82[JPT][hapmap]
rs11029641	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs11029642	0.87[ASN][1000 genomes]
rs12420230	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs12577673	0.86[ASN][1000 genomes]
rs1389455	1.00[CHB][hapmap]
rs211066	0.90[MEX][hapmap]
rs293930	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs293931	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs293933	0.87[ASN][1000 genomes]
rs293935	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];0.81[MEX][hapmap];0.87[ASN][1000 genomes]
rs293936	0.87[ASN][1000 genomes]
rs293954	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];0.87[ASN][1000 genomes]
rs293956	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];0.87[ASN][1000 genomes]
rs293957	0.87[ASN][1000 genomes]
rs293958	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs293959	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs293960	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs293963	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];0.87[ASN][1000 genomes]
rs293999	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];0.84[ASN][1000 genomes]
rs294001	0.84[ASN][1000 genomes]
rs294006	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];0.90[JPT][hapmap];0.81[MEX][hapmap];0.97[ASN][1000 genomes]
rs3802755	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs395877	0.97[ASN][1000 genomes]
rs4254034	0.90[JPT][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4278475	1.00[CHB][hapmap];0.86[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4293085	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs4562780	1.00[ASN][1000 genomes]
rs4576775	1.00[CHB][hapmap];0.81[CHD][hapmap]
rs4582926	0.96[ASN][1000 genomes]
rs4923371	0.97[ASN][1000 genomes]
rs4923376	1.00[CHB][hapmap];0.90[JPT][hapmap];0.93[ASN][1000 genomes]
rs6416050	1.00[ASN][1000 genomes]
rs7110072	1.00[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.97[ASN][1000 genomes]
rs7121838	0.90[CHB][hapmap]
rs72879841	0.97[ASN][1000 genomes]
rs7480145	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044544	chr11:26506962-26967285	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1050121	chr11:26532655-26675303	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv540974	chr11:26532655-26675303	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv916187	chr11:26576875-27328603	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv897141	chr11:26659406-26674033	Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv467779	chr11:26661690-26674033	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv553908	chr11:26661690-26674033	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26673200-26676600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:26673600-26674200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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