Variant report

Variant	rs72879841
Chromosome Location	chr11:26642381-26642382
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1012552	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10430848	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10734379	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10734381	0.97[ASN][1000 genomes]
rs10734382	0.97[ASN][1000 genomes]
rs10767563	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11029641	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11029642	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12577673	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs293930	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs293931	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs293933	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs293935	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs293936	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs293954	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs293956	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs293957	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs293958	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs293959	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs293960	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs293963	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs293999	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs294001	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs294006	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3802755	0.94[ASN][1000 genomes]
rs395877	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4254034	0.80[ASN][1000 genomes]
rs4278475	0.92[ASN][1000 genomes]
rs4562780	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4582926	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4923371	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4923376	0.90[ASN][1000 genomes]
rs6416050	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7110072	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7480145	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044544	chr11:26506962-26967285	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1050121	chr11:26532655-26675303	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv540974	chr11:26532655-26675303	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv916187	chr11:26576875-27328603	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26600400-26643000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr11:26640600-26642600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:26640600-26642800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr11:26641600-26644800	Enhancers	HMEC	breast
5	chr11:26642000-26645000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr11:26642000-26645200	Enhancers	NHEK	skin
7	chr11:26642200-26642600	Enhancers	A549	lung
8	chr11:26642200-26643000	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr11:26642200-26643000	Enhancers	Fetal Intestine Small	intestine
10	chr11:26642200-26643200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr11:26642200-26643200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr11:26642200-26643600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr11:26642200-26643800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr11:26642200-26644800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr11:26642200-26644800	Enhancers	NHDF-Ad	bronchial
16	chr11:26642200-26645000	Enhancers	Muscle Satellite Cultured Cells	--
17	chr11:26642200-26645000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr11:26642200-26645000	Enhancers	Placenta Amnion	Placenta Amnion
19	chr11:26642200-26645200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr11:26642200-26645200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr11:26642200-26645200	Enhancers	Hela-S3	cervix

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