Variant report

Variant	rs4923376
Chromosome Location	chr11:26696590-26696591
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:26695454..26697214-chr11:26724438..26726286,2	MCF-7	breast:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1012552	0.82[CEU][hapmap];1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs10430848	0.90[CHB][hapmap];0.89[JPT][hapmap];0.93[ASN][1000 genomes]
rs10734379	0.82[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.93[ASN][1000 genomes]
rs10734381	1.00[CHB][hapmap];0.90[JPT][hapmap];0.93[ASN][1000 genomes]
rs10734382	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.93[ASN][1000 genomes]
rs10742149	0.89[CHB][hapmap]
rs10742153	0.89[AFR][1000 genomes]
rs10767563	0.82[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs10767567	0.81[CHB][hapmap];0.81[JPT][hapmap];0.86[YRI][hapmap];0.84[AFR][1000 genomes]
rs10835019	0.81[CHB][hapmap]
rs10835021	1.00[CHB][hapmap]
rs11029641	1.00[CHB][hapmap];0.80[ASN][1000 genomes]
rs11029642	0.80[ASN][1000 genomes]
rs12420230	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs1389455	1.00[CHB][hapmap]
rs293930	1.00[CHB][hapmap];0.80[ASN][1000 genomes]
rs293931	1.00[CHB][hapmap];0.80[ASN][1000 genomes]
rs293933	0.80[ASN][1000 genomes]
rs293935	1.00[CHB][hapmap];0.80[ASN][1000 genomes]
rs293936	0.80[ASN][1000 genomes]
rs293954	1.00[CHB][hapmap];0.80[ASN][1000 genomes]
rs293956	1.00[CHB][hapmap];0.80[ASN][1000 genomes]
rs293957	0.80[ASN][1000 genomes]
rs293958	1.00[CHB][hapmap]
rs293959	1.00[CHB][hapmap];0.80[ASN][1000 genomes]
rs293960	1.00[CHB][hapmap];0.80[ASN][1000 genomes]
rs293963	1.00[CHB][hapmap];0.80[ASN][1000 genomes]
rs293999	1.00[CHB][hapmap]
rs294006	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs3802755	1.00[CHB][hapmap];0.91[JPT][hapmap];0.96[ASN][1000 genomes]
rs395877	0.90[ASN][1000 genomes]
rs4244526	0.86[YRI][hapmap];0.89[AFR][1000 genomes]
rs4254034	0.82[JPT][hapmap]
rs4278475	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.86[YRI][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4293085	0.82[CHB][hapmap];0.81[JPT][hapmap];0.87[YRI][hapmap];0.84[AFR][1000 genomes]
rs4462290	0.82[YRI][hapmap];0.89[AFR][1000 genomes]
rs4562780	0.93[ASN][1000 genomes]
rs4576775	1.00[CHB][hapmap]
rs4582926	0.89[ASN][1000 genomes]
rs4923371	0.90[ASN][1000 genomes]
rs6416050	0.93[ASN][1000 genomes]
rs7110072	0.82[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs7121838	0.90[CHB][hapmap]
rs72879841	0.90[ASN][1000 genomes]
rs7480145	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044544	chr11:26506962-26967285	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv916187	chr11:26576875-27328603	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26688600-26702400	Weak transcription	Fetal Intestine Small	intestine
2	chr11:26695200-26701800	Weak transcription	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links