Variant report

Variant	rs1389455
Chromosome Location	chr11:26648185-26648186
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1012552	1.00[CHB][hapmap]
rs10430848	0.90[CHB][hapmap]
rs10734379	1.00[CHB][hapmap]
rs10734381	1.00[CHB][hapmap]
rs10734382	1.00[CHB][hapmap]
rs10742149	0.88[CHB][hapmap];0.93[JPT][hapmap];0.90[ASN][1000 genomes]
rs10742151	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10767554	0.80[AMR][1000 genomes]
rs10767556	0.93[JPT][hapmap];0.90[ASN][1000 genomes]
rs10767561	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10767563	1.00[CHB][hapmap]
rs10767567	0.81[CHB][hapmap]
rs10835006	0.86[JPT][hapmap]
rs10835007	0.81[JPT][hapmap]
rs10835019	0.81[CHB][hapmap];0.96[GIH][hapmap];0.93[JPT][hapmap];0.87[MEX][hapmap];0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10835021	1.00[CHB][hapmap];0.91[JPT][hapmap];0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11029629	0.81[JPT][hapmap]
rs11029641	1.00[CHB][hapmap]
rs12420230	0.81[CHB][hapmap]
rs1567351	0.81[JPT][hapmap]
rs2298	0.88[JPT][hapmap]
rs28622575	0.91[ASN][1000 genomes]
rs293930	1.00[CHB][hapmap]
rs293931	1.00[CHB][hapmap]
rs293935	1.00[CHB][hapmap]
rs293954	1.00[CHB][hapmap]
rs293956	1.00[CHB][hapmap]
rs293958	1.00[CHB][hapmap]
rs293959	1.00[CHB][hapmap]
rs293960	1.00[CHB][hapmap]
rs293963	1.00[CHB][hapmap]
rs293999	1.00[CHB][hapmap]
rs294006	1.00[CHB][hapmap]
rs3802755	1.00[CHB][hapmap]
rs4129736	0.93[JPT][hapmap]
rs4278475	1.00[CHB][hapmap]
rs4293085	0.81[CHB][hapmap]
rs4390308	0.88[JPT][hapmap]
rs4447134	0.89[ASN][1000 genomes]
rs4576775	0.92[CEU][hapmap];1.00[CHB][hapmap];0.82[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.95[TSI][hapmap];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4603259	0.88[JPT][hapmap]
rs4922765	0.93[JPT][hapmap]
rs4922766	0.93[JPT][hapmap]
rs4923376	1.00[CHB][hapmap]
rs6484233	0.94[AMR][1000 genomes]
rs7101498	0.93[JPT][hapmap]
rs7110072	1.00[CHB][hapmap]
rs7121838	0.90[CHB][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap]
rs7129591	0.92[AMR][1000 genomes]
rs7928737	0.88[JPT][hapmap]
rs7930308	0.81[JPT][hapmap]
rs7931282	0.81[JPT][hapmap]
rs7934757	0.88[JPT][hapmap]
rs7936525	0.88[JPT][hapmap]
rs7938949	0.93[JPT][hapmap]
rs7948089	0.88[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044544	chr11:26506962-26967285	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1050121	chr11:26532655-26675303	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv540974	chr11:26532655-26675303	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv916187	chr11:26576875-27328603	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26645200-26671600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr11:26647800-26648200	Enhancers	NHDF-Ad	bronchial
3	chr11:26648000-26648600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr11:26648000-26649200	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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