Variant report

Variant	rs10835019
Chromosome Location	chr11:26636926-26636927
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1012552	0.81[CHB][hapmap]
rs10734379	0.81[CHB][hapmap]
rs10734381	0.81[CHB][hapmap]
rs10734382	0.81[CHB][hapmap]
rs10742149	0.86[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10742151	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10767556	1.00[JPT][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10767561	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10767563	0.81[CHB][hapmap]
rs10835005	0.84[ASN][1000 genomes]
rs10835006	0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs10835007	0.87[JPT][hapmap]
rs10835021	0.83[CEU][hapmap];1.00[JPT][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029629	0.87[JPT][hapmap]
rs11029641	0.81[CHB][hapmap]
rs1389455	0.81[CHB][hapmap];0.96[GIH][hapmap];0.93[JPT][hapmap];0.87[MEX][hapmap];0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1567351	0.87[JPT][hapmap]
rs2298	0.82[JPT][hapmap]
rs28622575	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs293931	0.81[CHB][hapmap]
rs293935	0.81[CHB][hapmap]
rs293954	0.81[CHB][hapmap]
rs293956	0.81[CHB][hapmap]
rs293958	0.81[CHB][hapmap]
rs293960	0.81[CHB][hapmap]
rs293963	0.81[CHB][hapmap]
rs293999	0.81[CHB][hapmap]
rs294006	0.81[CHB][hapmap]
rs4129736	0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs4278475	0.81[CHB][hapmap]
rs4390308	0.82[JPT][hapmap]
rs4447134	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4576775	0.81[CHB][hapmap];0.82[CHD][hapmap];0.93[JPT][hapmap];0.84[MEX][hapmap];0.92[ASN][1000 genomes]
rs4603259	0.82[JPT][hapmap]
rs4922765	0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs4922766	0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs4923376	0.81[CHB][hapmap]
rs6484233	0.84[ASN][1000 genomes]
rs6484234	0.82[ASN][1000 genomes]
rs7101498	0.87[JPT][hapmap]
rs7110072	0.81[CHB][hapmap];0.82[CHD][hapmap]
rs7121838	0.88[GIH][hapmap];0.93[JPT][hapmap]
rs7928737	0.82[JPT][hapmap]
rs7930308	0.87[JPT][hapmap]
rs7931282	0.87[JPT][hapmap]
rs7934757	0.82[JPT][hapmap]
rs7936525	0.82[JPT][hapmap]
rs7938949	0.87[JPT][hapmap];0.83[MEX][hapmap];0.83[ASN][1000 genomes]
rs7948089	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044544	chr11:26506962-26967285	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1050121	chr11:26532655-26675303	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv540974	chr11:26532655-26675303	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv916187	chr11:26576875-27328603	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26600400-26643000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr11:26636200-26637200	Enhancers	GM12878-XiMat	blood
3	chr11:26636400-26642200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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