Variant report

Variant	rs10734380
Chromosome Location	chr11:26669095-26669096
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10430935	0.93[ASN][1000 genomes]
rs10742152	0.83[ASN][1000 genomes]
rs10767559	0.94[ASN][1000 genomes]
rs10767562	0.94[ASN][1000 genomes]
rs10835007	0.92[ASN][1000 genomes]
rs10835010	0.93[ASN][1000 genomes]
rs11029627	0.93[ASN][1000 genomes]
rs11029629	0.93[ASN][1000 genomes]
rs11029630	0.93[ASN][1000 genomes]
rs1567351	0.92[ASN][1000 genomes]
rs1580669	0.94[ASN][1000 genomes]
rs1848563	0.92[ASN][1000 genomes]
rs2298	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4129736	0.92[AFR][1000 genomes]
rs4344447	0.82[ASN][1000 genomes]
rs4390308	0.94[ASN][1000 genomes]
rs4494265	0.89[ASN][1000 genomes]
rs4603259	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4922765	0.96[AFR][1000 genomes]
rs4922766	0.96[AFR][1000 genomes]
rs6484234	0.95[AFR][1000 genomes]
rs7111936	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7112236	0.88[ASN][1000 genomes]
rs7112532	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7112784	0.98[ASN][1000 genomes]
rs7928737	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7930308	0.94[ASN][1000 genomes]
rs7931282	0.92[ASN][1000 genomes]
rs7934757	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7936525	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7948089	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs925237	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044544	chr11:26506962-26967285	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1050121	chr11:26532655-26675303	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv540974	chr11:26532655-26675303	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv916187	chr11:26576875-27328603	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv553907	chr11:26654581-26670850	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv897141	chr11:26659406-26674033	Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv467779	chr11:26661690-26674033	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv553908	chr11:26661690-26674033	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26645200-26671600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links