Variant report

Variant	rs4244803
Chromosome Location	chr11:8613303-8613304
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10734635	0.87[AFR][1000 genomes]
rs10769935	0.87[AFR][1000 genomes]
rs4244802	0.87[AFR][1000 genomes]
rs4258378	0.87[AFR][1000 genomes]
rs4310618	0.87[AFR][1000 genomes]
rs4442553	0.87[AFR][1000 genomes]
rs4456256	0.87[AFR][1000 genomes]
rs6484300	0.87[AFR][1000 genomes]
rs7105636	0.83[AFR][1000 genomes]
rs7107276	0.87[AFR][1000 genomes]
rs7119831	0.87[AFR][1000 genomes]
rs7942680	0.87[AFR][1000 genomes]
rs7943945	0.87[AFR][1000 genomes]
rs7946508	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751035	chr11:8431654-8685451	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv896983	chr11:8526643-8682465	ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8606200-8614800	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr11:8606200-8614800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr11:8606400-8614600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr11:8606400-8614600	Weak transcription	Ovary	ovary
5	chr11:8606400-8614800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr11:8606400-8615000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:8606400-8615000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr11:8606600-8614800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr11:8606600-8614800	Weak transcription	Duodenum Mucosa	Duodenum
10	chr11:8608400-8615000	Weak transcription	Primary hematopoietic stem cells	blood
11	chr11:8610000-8614800	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr11:8610000-8615400	Weak transcription	Aorta	Aorta
13	chr11:8613000-8614200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr11:8613200-8614600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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