Variant report

Variant	rs4246296
Chromosome Location	chr15:99804069-99804070
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10152912	0.82[ASN][1000 genomes]
rs12911768	0.82[ASN][1000 genomes]
rs1567416	0.82[ASN][1000 genomes]
rs1976589	0.81[ASN][1000 genomes]
rs1976590	0.81[ASN][1000 genomes]
rs2048301	0.83[ASN][1000 genomes]
rs2862139	0.82[ASN][1000 genomes]
rs4344722	0.82[ASN][1000 genomes]
rs6598231	0.83[ASN][1000 genomes]
rs7164003	0.82[ASN][1000 genomes]
rs8042021	0.82[ASN][1000 genomes]
rs9920418	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531079	chr15:98907913-99878547	Strong transcription Weak transcription Genic enhancers Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
2	nsv1039575	chr15:98982045-99924685	Weak transcription Bivalent Enhancer Enhancers Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
3	nsv869529	chr15:99416774-99903351	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
4	nsv1055008	chr15:99477144-100019861	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
5	nsv1045124	chr15:99504843-99847210	Strong transcription Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
6	nsv904543	chr15:99513231-99991506	Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
7	nsv533926	chr15:99519820-99997114	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
8	nsv915926	chr15:99519820-100138705	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
9	nsv916822	chr15:99621061-99878564	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
10	nsv949203	chr15:99621061-99932797	Strong transcription Weak transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
11	nsv817289	chr15:99621061-100138705	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
12	nsv431411	chr15:99621061-100143999	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
13	nsv570716	chr15:99629901-99916332	Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
14	nsv904546	chr15:99696046-100166300	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
15	nsv1052528	chr15:99736977-99874210	Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
16	nsv1036346	chr15:99752391-100365458	Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
17	nsv542520	chr15:99752391-100365458	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
18	nsv1045367	chr15:99781626-99892182	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:99792200-99807400	Weak transcription	Ovary	ovary
2	chr15:99792200-99846400	Weak transcription	Lung	lung
3	chr15:99792400-99804200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr15:99792600-99832200	Weak transcription	Aorta	Aorta
5	chr15:99792800-99804200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr15:99792800-99804600	Weak transcription	Placenta	Placenta
7	chr15:99792800-99847000	Weak transcription	Right Ventricle	heart
8	chr15:99793000-99804200	Weak transcription	Fetal Heart	heart
9	chr15:99793000-99804400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr15:99793000-99804600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr15:99793000-99805400	Weak transcription	Fetal Brain Female	brain
12	chr15:99793000-99823800	Weak transcription	Fetal Brain Male	brain
13	chr15:99793000-99838000	Weak transcription	Rectal Smooth Muscle	rectum
14	chr15:99793000-99850400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr15:99793000-99866600	Weak transcription	Gastric	stomach
16	chr15:99793200-99804200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr15:99793200-99805600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr15:99793200-99805800	Weak transcription	Brain Germinal Matrix	brain
19	chr15:99793200-99808000	Weak transcription	Fetal Kidney	kidney
20	chr15:99793200-99822400	Weak transcription	Adipose Nuclei	Adipose
21	chr15:99794000-99804200	Weak transcription	Thymus	Thymus
22	chr15:99794000-99804400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr15:99794000-99804400	Weak transcription	Spleen	Spleen
24	chr15:99794000-99805000	Weak transcription	Primary neutrophils fromperipheralblood	blood
25	chr15:99794000-99808400	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr15:99794000-99830800	Weak transcription	Fetal Muscle Leg	muscle
27	chr15:99794000-99840000	Weak transcription	Brain Anterior Caudate	brain
28	chr15:99794000-99846400	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr15:99794200-99808600	Weak transcription	Pancreas	Pancrea
30	chr15:99794200-99814000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr15:99794200-99815600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr15:99794200-99815600	Weak transcription	Primary B cells from peripheral blood	blood
33	chr15:99794200-99834600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr15:99794200-99847000	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr15:99794400-99804600	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr15:99794400-99806000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr15:99794400-99807600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr15:99794400-99819000	Weak transcription	Primary B cells from cord blood	blood
39	chr15:99794400-99845200	Weak transcription	HSMMtube	muscle
40	chr15:99794600-99810400	Weak transcription	NH-A	brain
41	chr15:99794600-99813800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr15:99795000-99804200	Weak transcription	NHLF	lung
43	chr15:99795400-99805600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr15:99796600-99815000	Weak transcription	Dnd41	blood
45	chr15:99797400-99805400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr15:99798000-99806800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr15:99798000-99838200	Weak transcription	Primary T cells fromperipheralblood	blood
48	chr15:99798200-99811200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr15:99798200-99819200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr15:99798400-99804400	Weak transcription	Liver	Liver

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