Variant report

Variant	rs4253891
Chromosome Location	chr1:214632468-214632469
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10746445	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10746446	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11120321	0.83[EUR][1000 genomes]
rs11120334	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4130486	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4233305	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4233307	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4301608	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4421564	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4451529	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4465172	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4539105	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6540831	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6540836	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6540839	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6540840	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6665797	0.85[EUR][1000 genomes]
rs6682987	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7528679	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7528775	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7528800	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7535598	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7537274	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7555415	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:214601600-214633000	Weak transcription	Gastric	stomach
2	chr1:214613000-214649400	Weak transcription	Lung	lung
3	chr1:214613200-214633400	Weak transcription	Pancreas	Pancrea
4	chr1:214620000-214637400	Weak transcription	Fetal Brain Male	brain
5	chr1:214620800-214636800	Weak transcription	Adipose Nuclei	Adipose
6	chr1:214620800-214637800	Weak transcription	Fetal Muscle Trunk	muscle
7	chr1:214621000-214639800	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr1:214621200-214633400	Weak transcription	Fetal Kidney	kidney
9	chr1:214621200-214633600	Weak transcription	Fetal Intestine Small	intestine
10	chr1:214621400-214633400	Weak transcription	HepG2	liver
11	chr1:214621600-214633600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr1:214624000-214634600	Weak transcription	Fetal Stomach	stomach
13	chr1:214624600-214633800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr1:214625800-214633400	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr1:214625800-214636800	Weak transcription	Esophagus	oesophagus
16	chr1:214625800-214644800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr1:214626000-214633200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr1:214627000-214633400	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr1:214627000-214635000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr1:214627200-214640000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr1:214628400-214636800	Weak transcription	Stomach Smooth Muscle	stomach
22	chr1:214628600-214636800	Weak transcription	Aorta	Aorta
23	chr1:214628600-214636800	Weak transcription	Fetal Muscle Leg	muscle
24	chr1:214628600-214637600	Weak transcription	Ovary	ovary
25	chr1:214628600-214637800	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr1:214628600-214637800	Weak transcription	Placenta	Placenta
27	chr1:214628600-214640600	Weak transcription	Right Atrium	heart
28	chr1:214628800-214632600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr1:214628800-214632600	Enhancers	HUVEC	blood vessel
30	chr1:214628800-214633400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr1:214628800-214633800	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr1:214628800-214633800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr1:214628800-214633800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr1:214628800-214636800	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr1:214628800-214639400	Weak transcription	Stomach Mucosa	stomach
36	chr1:214629000-214633200	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr1:214629000-214635400	Weak transcription	HSMMtube	muscle
38	chr1:214629000-214637800	Weak transcription	Right Ventricle	heart
39	chr1:214629200-214633000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr1:214629200-214633400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr1:214629200-214633400	Weak transcription	HSMM	muscle
42	chr1:214629200-214633600	Weak transcription	HUES6 Cell Line	embryonic stem cell
43	chr1:214629200-214635200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr1:214629200-214644800	Weak transcription	Psoas Muscle	Psoas
45	chr1:214629400-214635600	Weak transcription	NHLF	lung
46	chr1:214629800-214635200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr1:214630000-214635000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr1:214630200-214633800	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr1:214630200-214635200	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr1:214630200-214635200	Weak transcription	NHDF-Ad	bronchial

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