Variant report

Variant	rs4451529
Chromosome Location	chr1:214629149-214629150
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:214624866..214627046-chr1:214628260..214630412,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10746445	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10746446	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs11120321	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs11120334	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4130486	0.82[EUR][1000 genomes]
rs4233305	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4233307	1.00[CEU][hapmap];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4253891	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4301608	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4421564	0.83[EUR][1000 genomes]
rs4465172	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4539105	0.82[CEU][hapmap];0.81[EUR][1000 genomes]
rs4571940	0.83[CHB][hapmap]
rs4655343	0.80[EUR][1000 genomes]
rs6540830	0.85[CHB][hapmap];1.00[YRI][hapmap]
rs6540831	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6540836	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6540839	1.00[CEU][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6540840	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6665797	0.83[EUR][1000 genomes]
rs6682987	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7528679	0.83[EUR][1000 genomes]
rs7528775	0.83[EUR][1000 genomes]
rs7528800	0.83[EUR][1000 genomes]
rs7535598	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7537274	1.00[CEU][hapmap];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7555415	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:214601600-214633000	Weak transcription	Gastric	stomach
2	chr1:214613000-214649400	Weak transcription	Lung	lung
3	chr1:214613200-214633400	Weak transcription	Pancreas	Pancrea
4	chr1:214620000-214637400	Weak transcription	Fetal Brain Male	brain
5	chr1:214620800-214636800	Weak transcription	Adipose Nuclei	Adipose
6	chr1:214620800-214637800	Weak transcription	Fetal Muscle Trunk	muscle
7	chr1:214621000-214639800	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr1:214621200-214633400	Weak transcription	Fetal Kidney	kidney
9	chr1:214621200-214633600	Weak transcription	Fetal Intestine Small	intestine
10	chr1:214621400-214633400	Weak transcription	HepG2	liver
11	chr1:214621600-214633600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr1:214624000-214634600	Weak transcription	Fetal Stomach	stomach
13	chr1:214624200-214630200	Enhancers	NHDF-Ad	bronchial
14	chr1:214624600-214633800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr1:214624800-214630200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr1:214625000-214631200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr1:214625200-214630000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr1:214625400-214629200	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr1:214625400-214629400	Enhancers	NHLF	lung
20	chr1:214625400-214630200	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr1:214625600-214629200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr1:214625800-214629200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr1:214625800-214629200	Enhancers	HSMM	muscle
24	chr1:214625800-214633400	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr1:214625800-214636800	Weak transcription	Esophagus	oesophagus
26	chr1:214625800-214644800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr1:214626000-214633200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr1:214626200-214630400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr1:214626200-214631000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr1:214626600-214629200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr1:214626600-214630200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr1:214627000-214630400	Enhancers	Muscle Satellite Cultured Cells	--
33	chr1:214627000-214633400	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr1:214627000-214635000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr1:214627200-214631000	Enhancers	NH-A	brain
36	chr1:214627200-214631400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr1:214627200-214640000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
38	chr1:214627600-214629200	Enhancers	iPS-20b Cell Line	embryonic stem cell
39	chr1:214627800-214629200	Enhancers	Primary hematopoietic stem cells short term culture	blood
40	chr1:214627800-214629200	Enhancers	Psoas Muscle	Psoas
41	chr1:214627800-214630200	Enhancers	Skeletal Muscle Male	skeletal muscle
42	chr1:214627800-214630800	Enhancers	Fetal Heart	heart
43	chr1:214628000-214629200	Enhancers	ES-I3 Cell Line	embryonic stem cell
44	chr1:214628000-214630200	Enhancers	Colon Smooth Muscle	Colon
45	chr1:214628200-214629400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr1:214628200-214629600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr1:214628400-214631400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr1:214628400-214636800	Weak transcription	Stomach Smooth Muscle	stomach
49	chr1:214628600-214630400	Enhancers	A549	lung
50	chr1:214628600-214630400	Enhancers	Hela-S3	cervix

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