Variant report

Variant	rs4655343
Chromosome Location	chr1:214593217-214593218
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11120321	0.83[EUR][1000 genomes]
rs4301608	0.81[EUR][1000 genomes]
rs4384206	1.00[CHB][hapmap];0.90[JPT][hapmap];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4451529	0.80[EUR][1000 genomes]
rs4465172	0.81[EUR][1000 genomes]
rs4655249	1.00[CHB][hapmap];0.86[JPT][hapmap];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6540831	0.81[EUR][1000 genomes]
rs7535598	0.81[EUR][1000 genomes]

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:214572600-214612600	Weak transcription	Fetal Intestine Small	intestine
2	chr1:214575200-214595800	Weak transcription	Fetal Kidney	kidney
3	chr1:214576800-214612200	Weak transcription	Fetal Intestine Large	intestine
4	chr1:214581400-214601200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr1:214584200-214603000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr1:214584400-214600000	Weak transcription	Fetal Muscle Trunk	muscle
7	chr1:214584800-214595800	Weak transcription	A549	lung
8	chr1:214585400-214593800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr1:214588000-214594000	Enhancers	HUVEC	blood vessel
10	chr1:214589000-214593600	Enhancers	Rectal Smooth Muscle	rectum
11	chr1:214589400-214593800	Enhancers	Colon Smooth Muscle	Colon
12	chr1:214590400-214595600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr1:214590800-214593400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr1:214590800-214593400	Enhancers	Duodenum Smooth Muscle	Duodenum
15	chr1:214590800-214594200	Enhancers	Skeletal Muscle Male	skeletal muscle
16	chr1:214590800-214594200	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr1:214590800-214595800	Enhancers	HMEC	breast
18	chr1:214591000-214593400	Enhancers	HSMMtube	muscle
19	chr1:214591000-214594000	Enhancers	Fetal Heart	heart
20	chr1:214591000-214594000	Enhancers	NH-A	brain
21	chr1:214591000-214594400	Enhancers	Placenta Amnion	Placenta Amnion
22	chr1:214591200-214593600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr1:214591400-214594000	Enhancers	Stomach Smooth Muscle	stomach
24	chr1:214591400-214612800	Weak transcription	Pancreas	Pancrea
25	chr1:214591600-214593400	Enhancers	HSMM	muscle
26	chr1:214591600-214595000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr1:214591600-214596200	Enhancers	NHEK	skin
28	chr1:214591600-214596400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr1:214591600-214598400	Weak transcription	Adipose Nuclei	Adipose
30	chr1:214591600-214600400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr1:214591600-214601200	Weak transcription	Gastric	stomach
32	chr1:214591600-214601400	Weak transcription	Lung	lung
33	chr1:214591800-214595000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr1:214591800-214595000	Weak transcription	Esophagus	oesophagus
35	chr1:214591800-214595200	Weak transcription	Right Ventricle	heart
36	chr1:214591800-214595200	Enhancers	Osteobl	bone
37	chr1:214592000-214594200	Enhancers	HUES64 Cell Line	embryonic stem cell
38	chr1:214592000-214594200	Enhancers	iPS-20b Cell Line	embryonic stem cell
39	chr1:214592000-214594400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr1:214592000-214600200	Enhancers	Breast Myoepithelial Primary Cells	Breast
41	chr1:214592000-214602200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr1:214592200-214593400	Flanking Active TSS	K562	blood
43	chr1:214592200-214594600	Enhancers	HUES48 Cell Line	embryonic stem cell
44	chr1:214592200-214595200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr1:214592200-214595600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr1:214592400-214593400	Enhancers	Left Ventricle	heart
47	chr1:214592400-214593400	Enhancers	Right Atrium	heart
48	chr1:214592400-214594000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr1:214592400-214594400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr1:214592400-214594600	Enhancers	iPS-18 Cell Line	embryonic stem cell

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