Variant report

Variant	rs7535598
Chromosome Location	chr1:214613484-214613485
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:214611152..214615489-chr1:214618364..214620847,4	MCF-7	breast:
2	chr1:214610565..214613807-chr1:214625696..214628799,3	K562	blood:
3	chr1:214596071..214597842-chr1:214611517..214614128,2	K562	blood:
4	chr1:214612014..214614928-chr1:214618939..214621537,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10746445	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10746446	1.00[CEU][hapmap]
rs11120321	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs11120334	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4130486	0.80[EUR][1000 genomes]
rs4233305	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4233307	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs4253891	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4301608	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4421564	0.81[EUR][1000 genomes]
rs4451529	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4465172	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4539105	0.87[CEU][hapmap]
rs4571940	0.86[CHB][hapmap]
rs4655249	0.83[TSI][hapmap]
rs4655254	0.82[JPT][hapmap]
rs4655343	0.81[EUR][1000 genomes]
rs6540830	0.87[CHB][hapmap];1.00[YRI][hapmap]
rs6540831	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6540836	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6540839	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs6540840	0.83[EUR][1000 genomes]
rs6665797	0.81[EUR][1000 genomes]
rs6682987	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7528679	0.81[EUR][1000 genomes]
rs7528775	0.81[EUR][1000 genomes]
rs7528800	0.81[EUR][1000 genomes]
rs7537274	1.00[CEU][hapmap];0.89[TSI][hapmap];0.87[EUR][1000 genomes]
rs7555415	1.00[CEU][hapmap];0.89[TSI][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:214594000-214618000	Weak transcription	Stomach Smooth Muscle	stomach
2	chr1:214596000-214614000	Weak transcription	Right Ventricle	heart
3	chr1:214601600-214625200	Weak transcription	Esophagus	oesophagus
4	chr1:214601600-214633000	Weak transcription	Gastric	stomach
5	chr1:214602800-214617600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr1:214604000-214617600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr1:214610400-214615800	Enhancers	HUVEC	blood vessel
8	chr1:214610400-214620600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr1:214610600-214617000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr1:214611000-214614200	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr1:214611200-214615400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr1:214611400-214615000	Enhancers	Fetal Thymus	thymus
13	chr1:214611600-214614400	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr1:214611600-214615800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr1:214611600-214616200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
16	chr1:214611600-214616200	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr1:214611600-214619200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr1:214611600-214620400	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr1:214611800-214618000	Weak transcription	Right Atrium	heart
20	chr1:214611800-214620400	Weak transcription	Fetal Muscle Trunk	muscle
21	chr1:214611800-214623200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr1:214612200-214614000	Weak transcription	Psoas Muscle	Psoas
23	chr1:214612200-214614200	Enhancers	Fetal Intestine Large	intestine
24	chr1:214612200-214616000	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr1:214612400-214613600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr1:214612400-214613600	Flanking Active TSS	A549	lung
27	chr1:214612400-214614000	Enhancers	NH-A	brain
28	chr1:214612400-214614200	Enhancers	Primary neutrophils fromperipheralblood	blood
29	chr1:214612400-214614800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr1:214612600-214613600	Flanking Active TSS	HepG2	liver
31	chr1:214612600-214613600	Flanking Active TSS	NHEK	skin
32	chr1:214612600-214614400	Enhancers	Fetal Intestine Small	intestine
33	chr1:214612600-214615200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr1:214612600-214615200	Enhancers	Placenta Amnion	Placenta Amnion
35	chr1:214612800-214613600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr1:214612800-214613600	Enhancers	Cortex derived primary cultured neurospheres	brain
37	chr1:214612800-214613600	Flanking Active TSS	Brain Cingulate Gyrus	brain
38	chr1:214612800-214613600	Enhancers	Placenta	Placenta
39	chr1:214612800-214614400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr1:214612800-214614400	Enhancers	NHDF-Ad	bronchial
41	chr1:214612800-214614600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
42	chr1:214612800-214614800	Enhancers	Rectal Mucosa Donor 31	rectum
43	chr1:214612800-214615200	Enhancers	H9 Cell Line	embryonic stem cell
44	chr1:214612800-214615400	Enhancers	H1 Cell Line	embryonic stem cell
45	chr1:214612800-214615400	Enhancers	Dnd41	blood
46	chr1:214612800-214616800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
47	chr1:214613000-214613600	Enhancers	Primary T cells fromperipheralblood	blood
48	chr1:214613000-214613600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr1:214613000-214613600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr1:214613000-214613600	Enhancers	Fetal Muscle Leg	muscle

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