Variant report

Variant	rs4263255
Chromosome Location	chr3:79540784-79540785
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs12487760	0.87[CEU][hapmap]
rs12487773	0.88[CEU][hapmap]
rs12492191	0.88[CEU][hapmap]
rs12496262	0.88[CEU][hapmap]
rs12497294	0.88[CEU][hapmap]
rs12714476	0.83[CEU][hapmap]
rs13058752	0.88[CEU][hapmap]
rs13063721	0.88[CEU][hapmap]
rs13072219	0.88[CEU][hapmap]
rs13076006	0.88[CEU][hapmap]
rs13083179	0.88[CEU][hapmap]
rs13084871	0.87[CHB][hapmap]
rs13090440	0.91[CEU][hapmap]
rs1489846	0.88[CEU][hapmap]
rs17396958	0.88[CEU][hapmap]
rs17397244	0.88[CEU][hapmap]
rs4130991	0.84[CEU][hapmap]
rs4284943	0.87[CEU][hapmap]
rs4389443	0.83[CEU][hapmap]
rs4447719	0.88[CEU][hapmap]
rs4452292	0.88[CEU][hapmap]
rs4510348	0.88[CEU][hapmap]
rs4513416	0.88[CEU][hapmap]
rs4524244	0.88[CEU][hapmap]
rs4535190	0.88[CEU][hapmap]
rs4550794	0.88[CEU][hapmap]
rs4680960	0.87[CEU][hapmap]
rs4680962	0.91[CEU][hapmap]
rs6548622	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6548623	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6548624	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6548625	0.90[CHB][hapmap];0.81[EUR][1000 genomes]
rs6548626	0.81[EUR][1000 genomes]
rs6548627	0.90[CHB][hapmap];0.81[EUR][1000 genomes]
rs6770483	0.90[CHB][hapmap]
rs6772426	0.91[CEU][hapmap]
rs6772464	0.86[CEU][hapmap]
rs6773975	0.88[CEU][hapmap]
rs6777529	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6784825	0.88[CEU][hapmap]
rs7612183	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap]
rs7614913	0.90[CHB][hapmap];0.81[EUR][1000 genomes]
rs7615149	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7617476	0.81[EUR][1000 genomes]
rs7623809	0.90[CHB][hapmap];0.81[EUR][1000 genomes]
rs7624099	0.88[CEU][hapmap]
rs7626242	0.90[CHB][hapmap];0.80[EUR][1000 genomes]
rs7628757	0.88[CEU][hapmap]
rs7632115	0.88[CEU][hapmap]
rs7640053	0.84[CEU][hapmap]
rs7646230	0.91[CEU][hapmap]
rs7651370	0.88[CEU][hapmap]
rs7651819	0.90[CHB][hapmap];0.81[EUR][1000 genomes]
rs7653197	0.88[CEU][hapmap]
rs9810404	0.88[CEU][hapmap]
rs9826366	0.82[CEU][hapmap]
rs9842315	0.80[CEU][hapmap]
rs9848827	0.90[CHB][hapmap]
rs9853257	0.87[CEU][hapmap]
rs9871445	0.90[CHB][hapmap];0.80[EUR][1000 genomes]
rs9873952	0.94[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381015	chr3:79425678-79545174	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv998248	chr3:79426615-79554963	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv834747	chr3:79441211-79591923	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:79539000-79541200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr3:79539200-79541200	Enhancers	Fetal Stomach	stomach
3	chr3:79539400-79540800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr3:79539400-79540800	Enhancers	Psoas Muscle	Psoas
5	chr3:79539400-79540800	Enhancers	NH-A	brain
6	chr3:79539400-79541200	Enhancers	Brain Germinal Matrix	brain
7	chr3:79539400-79541200	Enhancers	Colon Smooth Muscle	Colon
8	chr3:79539600-79540800	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr3:79539600-79540800	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr3:79539800-79540800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr3:79539800-79540800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr3:79539800-79540800	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr3:79539800-79540800	Enhancers	Duodenum Smooth Muscle	Duodenum
14	chr3:79540000-79541200	Enhancers	Rectal Smooth Muscle	rectum
15	chr3:79540200-79540800	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr3:79540200-79541200	Enhancers	Fetal Brain Male	brain
17	chr3:79540400-79540800	Enhancers	Fetal Brain Female	brain
18	chr3:79540400-79540800	Weak transcription	Fetal Lung	lung
19	chr3:79540600-79540800	Weak transcription	Stomach Smooth Muscle	stomach
20	chr3:79540600-79541000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr3:79540600-79541200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links