Variant report

Variant	rs6770483
Chromosome Location	chr3:79594835-79594836
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11707288	0.81[CEU][hapmap];0.80[TSI][hapmap]
rs13080611	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13084871	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs4263255	0.90[CHB][hapmap]
rs4279056	0.83[CEU][hapmap]
rs4389443	0.82[CEU][hapmap]
rs4527338	0.81[CEU][hapmap];0.80[TSI][hapmap]
rs4998490	0.80[CEU][hapmap]
rs6548622	0.90[CHB][hapmap]
rs6548624	0.90[CHB][hapmap]
rs6548625	0.92[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6548626	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6548627	0.92[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7612183	0.89[CHB][hapmap]
rs7614913	1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.83[GIH][hapmap];0.82[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7615149	0.90[CHB][hapmap]
rs7617476	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7623809	0.92[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7626242	1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.83[GIH][hapmap];0.82[JPT][hapmap];0.85[LWK][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7651819	1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.83[GIH][hapmap];0.82[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9815393	0.81[CEU][hapmap]
rs9848827	0.92[CEU][hapmap];1.00[CHB][hapmap];0.80[GIH][hapmap];0.82[JPT][hapmap];0.97[TSI][hapmap]
rs9853895	0.81[CEU][hapmap];0.80[TSI][hapmap]
rs9857859	0.81[CEU][hapmap]
rs9869846	0.80[CEU][hapmap]
rs9871445	0.92[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9873952	0.92[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3394288	chr3:79545122-79715746	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases
2	nsv877021	chr3:79560604-79892470	Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv877022	chr3:79585158-79760774	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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