Variant report

Variant	rs6548624
Chromosome Location	chr3:79560266-79560267
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs12487773	0.82[CEU][hapmap]
rs12492191	0.81[CEU][hapmap]
rs12496262	0.82[CEU][hapmap]
rs12497294	0.88[CEU][hapmap]
rs13058752	0.82[CEU][hapmap]
rs13063721	0.81[CEU][hapmap]
rs13072219	0.88[CEU][hapmap]
rs13076006	0.82[CEU][hapmap]
rs13083179	0.81[CEU][hapmap]
rs13084871	0.88[CHB][hapmap];0.83[JPT][hapmap]
rs13090440	0.91[CEU][hapmap]
rs1489846	0.81[CEU][hapmap]
rs17396958	0.88[CEU][hapmap]
rs17397244	0.82[CEU][hapmap]
rs4130991	0.84[CEU][hapmap]
rs4263255	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4284943	0.80[CEU][hapmap]
rs4447719	0.82[CEU][hapmap]
rs4452292	0.88[CEU][hapmap]
rs4510348	0.82[CEU][hapmap]
rs4513416	0.81[CEU][hapmap]
rs4524244	0.81[CEU][hapmap]
rs4535190	0.88[CEU][hapmap]
rs4550794	0.88[CEU][hapmap]
rs4680960	0.87[CEU][hapmap]
rs4680962	0.83[CEU][hapmap]
rs6548622	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6548623	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6548625	0.90[CHB][hapmap];0.81[JPT][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6548626	0.82[EUR][1000 genomes]
rs6548627	0.90[CHB][hapmap];0.81[JPT][hapmap];0.82[EUR][1000 genomes]
rs6770483	0.90[CHB][hapmap]
rs6772426	0.84[CEU][hapmap]
rs6773975	0.88[CEU][hapmap]
rs6777529	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6784825	0.81[CEU][hapmap]
rs7612183	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7614913	0.90[CHB][hapmap];0.82[EUR][1000 genomes]
rs7615149	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7617476	0.82[EUR][1000 genomes]
rs7623809	0.90[CHB][hapmap];0.81[JPT][hapmap];0.82[EUR][1000 genomes]
rs7624099	0.81[CEU][hapmap]
rs7626242	0.90[CHB][hapmap];0.81[EUR][1000 genomes]
rs7628757	0.88[CEU][hapmap]
rs7632115	0.82[CEU][hapmap]
rs7646230	0.84[CEU][hapmap]
rs7651370	0.88[CEU][hapmap]
rs7651819	0.90[CHB][hapmap];0.82[EUR][1000 genomes]
rs7653197	0.88[CEU][hapmap]
rs9810404	0.82[CEU][hapmap]
rs9848827	0.90[CHB][hapmap]
rs9853257	0.81[CEU][hapmap]
rs9871445	0.90[CHB][hapmap];0.81[JPT][hapmap];0.81[EUR][1000 genomes]
rs9873952	0.94[CHB][hapmap];0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834747	chr3:79441211-79591923	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
2	esv3394288	chr3:79545122-79715746	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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