Variant report

Variant	rs4265228
Chromosome Location	chr8:90377074-90377075
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1383033	0.95[EUR][1000 genomes]
rs1479904	0.80[EUR][1000 genomes]
rs16894918	0.94[EUR][1000 genomes]
rs16895916	0.87[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs1904519	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1993967	0.93[EUR][1000 genomes]
rs1993968	0.93[EUR][1000 genomes]
rs2029276	0.84[EUR][1000 genomes]
rs2029277	1.00[YRI][hapmap]
rs34011839	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4265229	0.90[AMR][1000 genomes]
rs4458917	0.82[EUR][1000 genomes]
rs55658430	0.82[AMR][1000 genomes]
rs55978831	0.84[EUR][1000 genomes]
rs62532771	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62532774	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs67779407	0.94[EUR][1000 genomes]
rs7833686	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv465735	chr8:89760311-90729507	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv611714	chr8:89760311-90729507	Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Weak transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv1024956	chr8:90104423-90459539	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv539671	chr8:90104423-90459539	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv1032886	chr8:90253748-90398240	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
6	nsv611719	chr8:90337010-90392422	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:90370000-90383600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr8:90375600-90378000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr8:90376600-90377200	Enhancers	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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