Variant report

Variant	rs4266296
Chromosome Location	chr4:110735818-110735819
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NR2F2	chr4:110735701-110737852	K562	blood:	n/a	n/a

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:110622109..110625008-chr4:110733953..110738254,7	MCF-7	breast:
2	chr4:110648642..110653205-chr4:110733223..110738599,11	K562	blood:
3	chr4:110734994..110736731-chr4:110899705..110902509,2	K562	blood:
4	chr4:110733962..110737774-chr4:110769396..110773000,3	K562	blood:
5	chr4:110648895..110652104-chr4:110733858..110738186,8	K562	blood:
6	chr4:110621787..110624443-chr4:110734368..110736643,3	K562	blood:
7	chr4:110622297..110625771-chr4:110735143..110738902,5	K562	blood:
8	chr4:110635477..110637469-chr4:110733651..110735877,2	K562	blood:
9	chr13:31038798..31040752-chr4:110734724..110737666,2	MCF-7	breast:
10	chr4:110733952..110736474-chr4:110747791..110750074,2	MCF-7	breast:

No data

Variant related genes	Relation type
GAR1	TF binding region
ENSG00000138798	Chromatin interaction
ENSG00000138794	Chromatin interaction
ENSG00000123739	Chromatin interaction
ENSG00000189403	Chromatin interaction
ENSG00000180245	Chromatin interaction
ENSG00000183423	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1002989	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11930711	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12648667	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12649021	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4333185	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62324952	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62324953	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7672881	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7673186	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530156	chr4:110721397-110911297	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110722600-110736200	Weak transcription	Pancreas	Pancrea
2	chr4:110732200-110736000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr4:110732200-110736200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr4:110732400-110736000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr4:110732400-110736200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr4:110732800-110736000	Weak transcription	Aorta	Aorta
7	chr4:110734400-110736000	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr4:110734400-110736000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr4:110734600-110736000	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr4:110734600-110736000	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr4:110735000-110736000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr4:110735200-110736000	Enhancers	Primary hematopoietic stem cells	blood
13	chr4:110735400-110737600	Active TSS	K562	blood
14	chr4:110735600-110736000	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr4:110735600-110736000	Enhancers	Esophagus	oesophagus
16	chr4:110735600-110736000	Enhancers	Spleen	Spleen
17	chr4:110735600-110736000	Enhancers	HepG2	liver
18	chr4:110735800-110736000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr4:110735800-110736000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
20	chr4:110735800-110736000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr4:110735800-110736000	Enhancers	Primary B cells from cord blood	blood
22	chr4:110735800-110736000	Enhancers	Primary B cells from peripheral blood	blood
23	chr4:110735800-110736000	Enhancers	Primary T cells from cord blood	blood
24	chr4:110735800-110736000	Enhancers	Primary T cells fromperipheralblood	blood
25	chr4:110735800-110736000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
26	chr4:110735800-110736000	Enhancers	Primary T helper naive cells from peripheral blood	blood
27	chr4:110735800-110736000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
28	chr4:110735800-110736000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
29	chr4:110735800-110736000	Enhancers	Primary T helper cells fromperipheralblood	blood
30	chr4:110735800-110736000	Active TSS	Primary T regulatory cells fromperipheralblood	blood
31	chr4:110735800-110736000	Enhancers	Primary T killer memory cells from peripheral blood	blood
32	chr4:110735800-110736000	Active TSS	Cortex derived primary cultured neurospheres	brain
33	chr4:110735800-110736000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr4:110735800-110736000	Enhancers	Adipose Nuclei	Adipose
35	chr4:110735800-110736000	Enhancers	Liver	Liver
36	chr4:110735800-110736000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
37	chr4:110735800-110736000	Enhancers	Fetal Heart	heart
38	chr4:110735800-110736000	Enhancers	Fetal Intestine Large	intestine
39	chr4:110735800-110736000	Enhancers	Fetal Muscle Trunk	muscle
40	chr4:110735800-110736000	Enhancers	Fetal Muscle Leg	muscle
41	chr4:110735800-110736000	Enhancers	Skeletal Muscle Male	skeletal muscle
42	chr4:110735800-110736000	Flanking Active TSS	GM12878-XiMat	blood
43	chr4:110735800-110736000	Enhancers	Hela-S3	cervix
44	chr4:110735800-110736000	Enhancers	HSMMtube	muscle
45	chr4:110735800-110736000	Enhancers	HUVEC	blood vessel
46	chr4:110735800-110736000	Enhancers	NH-A	brain
47	chr4:110735800-110736000	Enhancers	NHEK	skin
48	chr4:110735800-110736200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
49	chr4:110735800-110736200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
50	chr4:110735800-110736200	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood

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