Variant report

Variant	rs62324953
Chromosome Location	chr4:110733564-110733565
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CCNT2	chr4:110733564-110733723	K562	blood:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:110648642..110653205-chr4:110733223..110738599,11	K562	blood:
2	chr4:110353100..110355192-chr4:110733250..110735765,3	MCF-7	breast:
3	chr4:110667719..110670763-chr4:110732852..110735332,3	K562	blood:
4	chr4:110715411..110717007-chr4:110731404..110733909,2	K562	blood:
5	chr4:110667959..110670763-chr4:110732852..110734375,2	K562	blood:

No data

No data

No data

Variant related genes	Relation type
GAR1	TF binding region
ENSG00000123739	Chromatin interaction
ENSG00000138802	Chromatin interaction
ENSG00000247950	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1002989	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11930711	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12648667	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12649021	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4266296	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4333185	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62324952	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7672881	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7673186	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530156	chr4:110721397-110911297	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110722600-110736200	Weak transcription	Pancreas	Pancrea
2	chr4:110722800-110735800	Weak transcription	Brain Hippocampus Middle	brain
3	chr4:110724400-110735800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr4:110732200-110735800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr4:110732200-110735800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr4:110732200-110736000	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr4:110732200-110736200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr4:110732400-110735800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr4:110732400-110735800	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr4:110732400-110735800	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr4:110732400-110735800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr4:110732400-110736000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr4:110732400-110736200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr4:110732600-110735800	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr4:110732600-110735800	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr4:110732800-110736000	Weak transcription	Aorta	Aorta
17	chr4:110733000-110735400	Enhancers	K562	blood
18	chr4:110733000-110735800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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