Variant report

(count:27 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NR2F2	chr4:110731962-110732661	K562	blood:	n/a	n/a
2	MAX	chr4:110732096-110732584	K562	blood:	n/a	n/a
3	USF1	chr4:110732125-110732582	K562	blood:	n/a	n/a
4	TAL1	chr4:110732080-110732625	K562	blood:	n/a	n/a
5	MYC	chr4:110732041-110732660	K562	blood:	n/a	n/a
6	JUND	chr4:110731720-110732629	K562	blood:	n/a	n/a
7	IRF1	chr4:110732331-110733357	K562	blood:	n/a	chr4:110733023-110733044
8	TEAD4	chr4:110732089-110732578	K562	blood:	n/a	n/a
9	MAZ	chr4:110731813-110732510	K562	blood:	n/a	n/a
10	USF1	chr4:110732095-110732519	K562	blood:	n/a	n/a
11	ARID3A	chr4:110731864-110732691	K562	blood:	n/a	n/a
12	CUX1	chr4:110732198-110732527	K562	blood:	n/a	n/a
13	TEAD4	chr4:110732085-110732618	K562	blood:	n/a	n/a
14	CBX3	chr4:110731964-110732635	K562	blood:	n/a	n/a
15	RCOR1	chr4:110731866-110732513	K562	blood:	n/a	n/a
16	NR2F2	chr4:110732113-110732505	K562	blood:	n/a	n/a
17	MAX	chr4:110732030-110732592	K562	blood:	n/a	n/a
18	MAX	chr4:110732054-110732554	K562	blood:	n/a	n/a
19	GATA2	chr4:110732049-110732553	K562	blood:	n/a	n/a
20	MYC	chr4:110732157-110732660	K562	blood:	n/a	n/a
21	ATF1	chr4:110731735-110732550	K562	blood:	n/a	n/a
22	CEBPB	chr4:110731830-110732560	K562	blood:	n/a	n/a
23	IRF1	chr4:110731543-110733253	K562	blood:	n/a	chr4:110733023-110733044
24	POLR2A	chr4:110732006-110732567	K562	blood:	n/a	n/a
25	TBL1XR1	chr4:110731985-110732518	K562	blood:	n/a	n/a
26	TBP	chr4:110732048-110732556	K562	blood:	n/a	n/a
27	EP300	chr4:110731729-110733204	K562	blood:	n/a	n/a

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:110715411..110717007-chr4:110731404..110733909,2	K562	blood:
2	chr4:110729563..110733409-chr4:110734444..110738325,6	MCF-7	breast:
3	chr4:110678909..110681731-chr4:110731902..110733559,2	K562	blood:

No data

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1002989	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11930711	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12648667	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12649021	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4266296	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4333185	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62324952	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62324953	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7672881	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530156	chr4:110721397-110911297	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110722600-110736200	Weak transcription	Pancreas	Pancrea
2	chr4:110722800-110735800	Weak transcription	Brain Hippocampus Middle	brain
3	chr4:110724400-110735800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr4:110731200-110732600	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr4:110731600-110732600	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr4:110731800-110733000	Flanking Active TSS	K562	blood
7	chr4:110732200-110735800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr4:110732200-110735800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr4:110732200-110736000	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr4:110732200-110736200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr4:110732400-110735800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr4:110732400-110735800	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr4:110732400-110735800	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr4:110732400-110735800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr4:110732400-110736000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr4:110732400-110736200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

Quick Search: