Variant report

Variant	rs4283281
Chromosome Location	chr17:66733138-66733139
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11653164	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12449815	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4246425	0.83[ASN][1000 genomes]
rs4482354	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4968937	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4968938	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6501720	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7225079	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8073942	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9674712	0.85[ASN][1000 genomes]
rs9674999	0.80[ASN][1000 genomes]
rs9891596	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9891830	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067334	chr17:66695039-67221585	Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv543411	chr17:66695039-67221585	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv523831	chr17:66733138-66738905	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:66729000-66734600	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr17:66729800-66733400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr17:66730400-66734000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr17:66730800-66733600	Weak transcription	Fetal Lung	lung
5	chr17:66731000-66736800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr17:66731200-66734000	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr17:66731400-66733400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr17:66731400-66733400	Weak transcription	Left Ventricle	heart
9	chr17:66731400-66733400	Weak transcription	Ovary	ovary
10	chr17:66731400-66733600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr17:66731400-66733800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr17:66731400-66733800	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr17:66731400-66734200	Weak transcription	HSMMtube	muscle
14	chr17:66731600-66733600	Weak transcription	Fetal Heart	heart
15	chr17:66731600-66734000	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr17:66731600-66734000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr17:66732200-66733400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr17:66733000-66733800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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