Variant report

Variant	rs8073942
Chromosome Location	chr17:66743606-66743607
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11653164	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12449815	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4283281	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4482354	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4968937	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4968938	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6501720	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7225079	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9891596	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9891830	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067334	chr17:66695039-67221585	Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv543411	chr17:66695039-67221585	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs8073942	TEX2	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:66741800-66745800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr17:66742200-66745400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr17:66742200-66755600	Weak transcription	Right Atrium	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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