Variant report

Variant	rs7225079
Chromosome Location	chr17:66746086-66746087
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11653164	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12449815	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4283281	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4482354	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4968937	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4968938	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6501720	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8073942	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9891596	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9891830	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067334	chr17:66695039-67221585	Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv543411	chr17:66695039-67221585	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:66742200-66755600	Weak transcription	Right Atrium	heart
2	chr17:66745600-66746400	Enhancers	H9 Cell Line	embryonic stem cell
3	chr17:66745600-66746600	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
4	chr17:66745600-66746600	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr17:66745600-66746600	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr17:66745600-66747600	Enhancers	H1 Cell Line	embryonic stem cell
7	chr17:66745800-66746200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr17:66745800-66746400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr17:66746000-66746200	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr17:66746000-66746200	Flanking Active TSS	A549	lung
11	chr17:66746000-66746400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
12	chr17:66746000-66746400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr17:66746000-66746400	Active TSS	Pancreatic Islets	Pancreatic Islet
14	chr17:66746000-66746400	Flanking Bivalent TSS/Enh	HepG2	liver
15	chr17:66746000-66746600	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
16	chr17:66746000-66746600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
17	chr17:66746000-66746600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr17:66746000-66746600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr17:66746000-66746600	Flanking Active TSS	Osteobl	bone

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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