Variant report

Variant	rs429368
Chromosome Location	chr11:16862483-16862484
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs1638456	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1638457	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2057788	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs369457	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs370053	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs370671	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs371905	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs373266	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs376641	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs378863	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs379051	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs380655	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs382280	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs385627	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs385943	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs387849	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs389967	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs390974	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs391332	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs392706	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs393633	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs397343	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs397373	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs398216	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs400085	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs400349	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs400458	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs401820	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs402982	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs404492	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs406109	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs406890	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs406937	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs407354	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs407932	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs409354	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs414219	0.81[AMR][1000 genomes]
rs415265	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs417349	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs417406	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs418034	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs420975	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs425325	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs425745	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs426085	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs427429	0.82[AMR][1000 genomes]
rs428933	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs430211	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs431208	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs432046	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs432656	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs433212	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs433225	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs434761	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs434899	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs435206	0.82[AMR][1000 genomes]
rs439224	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs440212	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs443327	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs445146	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs445205	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs445431	0.81[AMR][1000 genomes]
rs446518	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs446612	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs450828	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs452414	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs452745	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs453015	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs454538	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs454869	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58555284	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7951328	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832077	chr11:16834545-17059176	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16813200-16871400	Weak transcription	Rectal Smooth Muscle	rectum
2	chr11:16823000-16871400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr11:16839200-16878800	Weak transcription	Thymus	Thymus
4	chr11:16842600-16873400	Weak transcription	Hela-S3	cervix
5	chr11:16843000-16874600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr11:16846600-16874000	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr11:16847000-16864000	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr11:16847000-16871200	Weak transcription	Brain Substantia Nigra	brain
9	chr11:16847200-16871400	Weak transcription	Brain Hippocampus Middle	brain
10	chr11:16847800-16865000	Weak transcription	Fetal Muscle Leg	muscle
11	chr11:16847800-16871600	Weak transcription	Fetal Muscle Trunk	muscle
12	chr11:16848000-16863000	Weak transcription	Lung	lung
13	chr11:16848200-16863000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr11:16848200-16871400	Weak transcription	Aorta	Aorta
15	chr11:16848200-16875200	Weak transcription	Right Ventricle	heart
16	chr11:16848400-16866600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr11:16848400-16878600	Weak transcription	Small Intestine	intestine
18	chr11:16848600-16868400	Weak transcription	HSMMtube	muscle
19	chr11:16849800-16865400	Strong transcription	Fetal Intestine Small	intestine
20	chr11:16849800-16871400	Weak transcription	Pancreas	Pancrea
21	chr11:16850400-16871200	Weak transcription	Fetal Brain Female	brain
22	chr11:16850600-16865600	Weak transcription	Psoas Muscle	Psoas
23	chr11:16850600-16871800	Weak transcription	Colonic Mucosa	Colon
24	chr11:16850800-16870600	Weak transcription	Fetal Brain Male	brain
25	chr11:16853400-16883800	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr11:16854000-16868000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr11:16855000-16863400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr11:16855200-16862600	Weak transcription	Left Ventricle	heart
29	chr11:16855200-16863600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr11:16855200-16873000	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr11:16855200-16877600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr11:16855200-16878800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr11:16855400-16862600	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr11:16856200-16863200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr11:16857800-16862600	Weak transcription	Stomach Mucosa	stomach
36	chr11:16858000-16876800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr11:16858200-16871600	Weak transcription	A549	lung
38	chr11:16858200-16878800	Weak transcription	Brain Cingulate Gyrus	brain
39	chr11:16858400-16876400	Weak transcription	Brain Germinal Matrix	brain
40	chr11:16858800-16863400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr11:16859200-16868800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr11:16859800-16863000	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr11:16860000-16870000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr11:16861000-16864000	Strong transcription	Fetal Intestine Large	intestine
45	chr11:16861200-16863200	Strong transcription	HUES48 Cell Line	embryonic stem cell
46	chr11:16861200-16863400	Strong transcription	Placenta Amnion	Placenta Amnion
47	chr11:16861200-16864000	Strong transcription	Rectal Mucosa Donor 31	rectum
48	chr11:16861200-16864000	Strong transcription	Stomach Smooth Muscle	stomach
49	chr11:16861200-16864200	Strong transcription	Duodenum Mucosa	Duodenum
50	chr11:16861200-16879800	Weak transcription	Primary T cells fromperipheralblood	blood

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