Variant report

Variant	rs4306445
Chromosome Location	chr15:58539379-58539380
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs16939897	1.00[CHB][hapmap]
rs2414553	0.83[YRI][hapmap]
rs2414559	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4774291	0.84[AFR][1000 genomes]
rs7173859	1.00[CHB][hapmap]
rs8024186	1.00[CHB][hapmap]
rs8043218	1.00[CHB][hapmap]
rs935211	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs938508	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047246	chr15:58375607-58707158	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv833024	chr15:58447459-58621963	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1050473	chr15:58479888-58562270	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv904264	chr15:58505122-58588510	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv904265	chr15:58517528-58588510	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1051058	chr15:58519922-59092530	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
7	nsv542401	chr15:58519922-59092530	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
8	nsv529717	chr15:58519923-58756814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
9	nsv1042201	chr15:58520746-58780710	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58524800-58547400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr15:58532800-58540600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:58534200-58539400	Weak transcription	Hela-S3	cervix
4	chr15:58535000-58546200	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr15:58536800-58539800	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr15:58536800-58540600	Enhancers	Skeletal Muscle Male	skeletal muscle
7	chr15:58537000-58539800	Weak transcription	Primary T cells from cord blood	blood
8	chr15:58537200-58539800	Weak transcription	Liver	Liver
9	chr15:58537200-58540000	Enhancers	Right Atrium	heart
10	chr15:58537200-58542400	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr15:58537800-58539600	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr15:58537800-58540200	Enhancers	Psoas Muscle	Psoas
13	chr15:58538200-58542400	Enhancers	Fetal Heart	heart
14	chr15:58538200-58542600	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr15:58538400-58539800	Weak transcription	Aorta	Aorta
16	chr15:58538400-58541200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
17	chr15:58538800-58539600	Weak transcription	Right Ventricle	heart
18	chr15:58539000-58539400	Weak transcription	Left Ventricle	heart
19	chr15:58539200-58541800	Enhancers	Placenta	Placenta
20	chr15:58539200-58541800	Weak transcription	Fetal Thymus	thymus

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