Variant report

Variant	rs430828
Chromosome Location	chr5:35628820-35628821
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12514911	0.96[EUR][1000 genomes]
rs12521927	1.00[EUR][1000 genomes]
rs1508662	0.89[EUR][1000 genomes]
rs1605677	1.00[EUR][1000 genomes]
rs286441	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs366709	0.97[AFR][1000 genomes]
rs369792	0.95[AFR][1000 genomes]
rs406830	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs452060	0.95[AFR][1000 genomes]
rs60139581	1.00[EUR][1000 genomes]
rs6878233	0.89[EUR][1000 genomes]
rs73091428	0.89[EUR][1000 genomes]
rs7700662	1.00[EUR][1000 genomes]
rs7725149	0.89[EUR][1000 genomes]
rs7735024	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525477	chr5:35530905-35792990	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35618600-35633800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:35618600-35646800	Weak transcription	Spleen	Spleen
3	chr5:35618600-35653800	Weak transcription	Lung	lung
4	chr5:35618600-35678000	Weak transcription	Left Ventricle	heart
5	chr5:35619000-35629400	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr5:35619000-35629800	Weak transcription	Fetal Intestine Large	intestine
7	chr5:35619000-35631400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr5:35619000-35632400	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr5:35619000-35632600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr5:35619000-35634400	Weak transcription	Primary T cells from cord blood	blood
11	chr5:35619000-35634400	Weak transcription	Duodenum Mucosa	Duodenum
12	chr5:35619000-35638000	Weak transcription	Colon Smooth Muscle	Colon
13	chr5:35619000-35644200	Weak transcription	Brain Hippocampus Middle	brain
14	chr5:35619000-35651400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr5:35619000-35651600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr5:35619000-35652000	Weak transcription	Rectal Smooth Muscle	rectum
17	chr5:35619200-35629400	Weak transcription	Fetal Intestine Small	intestine
18	chr5:35619200-35629800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr5:35619200-35629800	Weak transcription	Adipose Nuclei	Adipose
20	chr5:35619200-35629800	Weak transcription	Liver	Liver
21	chr5:35619200-35629800	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr5:35619200-35630200	Weak transcription	Fetal Stomach	stomach
23	chr5:35619200-35630200	Weak transcription	Pancreas	Pancrea
24	chr5:35619200-35632200	Weak transcription	Brain Cingulate Gyrus	brain
25	chr5:35619200-35632200	Weak transcription	Fetal Muscle Leg	muscle
26	chr5:35619200-35632400	Weak transcription	Brain Angular Gyrus	brain
27	chr5:35619200-35634200	Weak transcription	Stomach Smooth Muscle	stomach
28	chr5:35619200-35634400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr5:35619200-35634400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr5:35619200-35635400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr5:35619200-35637600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr5:35619200-35639000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr5:35619200-35644000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr5:35619200-35645800	Weak transcription	Small Intestine	intestine
35	chr5:35619200-35646000	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr5:35619200-35649800	Weak transcription	Hela-S3	cervix
37	chr5:35619200-35651400	Weak transcription	Primary T helper cells PMA-I stimulated	--
38	chr5:35619400-35629800	Weak transcription	Primary T helper cells fromperipheralblood	blood
39	chr5:35619400-35629800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr5:35619400-35629800	Weak transcription	Fetal Kidney	kidney
41	chr5:35619400-35632400	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr5:35619400-35634000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr5:35619400-35634200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr5:35619400-35652200	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr5:35623400-35629800	Weak transcription	Dnd41	blood
46	chr5:35623800-35629400	Weak transcription	Primary hematopoietic stem cells	blood
47	chr5:35624200-35634400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
48	chr5:35624400-35629800	Weak transcription	Brain Anterior Caudate	brain
49	chr5:35624800-35629600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr5:35624800-35629600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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