Variant report

Variant	rs60139581
Chromosome Location	chr5:35616897-35616898
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12514911	0.96[EUR][1000 genomes]
rs12521927	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1508662	0.89[EUR][1000 genomes]
rs1605677	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs286441	1.00[EUR][1000 genomes]
rs406830	1.00[EUR][1000 genomes]
rs430828	1.00[EUR][1000 genomes]
rs6878233	0.89[EUR][1000 genomes]
rs73091428	0.89[EUR][1000 genomes]
rs7700662	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7725149	0.89[EUR][1000 genomes]
rs7735024	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525477	chr5:35530905-35792990	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35616600-35617200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
2	chr5:35616800-35617400	Enhancers	Primary T helper naive cells from peripheral blood	blood
3	chr5:35616800-35617400	Enhancers	Primary T killer memory cells from peripheral blood	blood
4	chr5:35616800-35619400	Flanking Active TSS	Dnd41	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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