Variant report

Variant	rs7700662
Chromosome Location	chr5:35599404-35599405
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:35227884..35229757-chr5:35598684..35600438,2	MCF-7	breast:
2	chr5:35003202..35003721-chr5:35598992..35599773,2	MCF-7	breast:
3	chr5:35598976..35599731-chr9:99537888..99538531,2	MCF-7	breast:
4	chr5:35089923..35090519-chr5:35599040..35599796,4	MCF-7	breast:
5	chr5:35202427..35203125-chr5:35598829..35599823,2	MCF-7	breast:
6	chr5:35229016..35230896-chr5:35598713..35599735,8	MCF-7	breast:
7	chr5:35030252..35030843-chr5:35598768..35599626,2	MCF-7	breast:
8	chr5:35595236..35597219-chr5:35597917..35600300,2	MCF-7	breast:
9	chr5:35598915..35599476-chr5:35617819..35618421,2	MCF-7	breast:
10	chr5:35228021..35230046-chr5:35597822..35599933,2	MCF-7	breast:
11	chr5:35089814..35090431-chr5:35599032..35599713,2	MCF-7	breast:
12	chr5:35598928..35599795-chr5:35617497..35618404,5	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12514911	0.96[EUR][1000 genomes]
rs12521927	1.00[EUR][1000 genomes]
rs13328131	0.82[MEX][hapmap]
rs13359710	0.87[GIH][hapmap]
rs1508662	0.89[EUR][1000 genomes]
rs1605677	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16902381	0.87[GIH][hapmap]
rs286441	1.00[EUR][1000 genomes]
rs406830	1.00[EUR][1000 genomes]
rs430828	1.00[EUR][1000 genomes]
rs60139581	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6878233	0.89[EUR][1000 genomes]
rs73091428	0.89[EUR][1000 genomes]
rs7725149	0.89[EUR][1000 genomes]
rs7735024	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525477	chr5:35530905-35792990	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv525994	chr5:35577257-35600210	Flanking Active TSS Enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7700662	BCHE	trans	lymphoblastoid	seeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35598800-35599600	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr5:35598800-35599600	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr5:35598800-35600200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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