Variant report

Variant	rs4311644
Chromosome Location	chr8:125043634-125043635
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:125042083..125044005-chr8:125437256..125439474,39	MCF-7	breast:
2	chr8:125042982..125045876-chr8:125052153..125053769,2	MCF-7	breast:
3	chr8:125041034..125043995-chr8:125047107..125050241,3	MCF-7	breast:
4	chr8:125042055..125045279-chr8:125436777..125440120,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000254249	Chromatin interaction
ENSG00000181171	Chromatin interaction

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs10094266	0.82[EUR][1000 genomes]
rs10094533	0.80[CEU][hapmap];0.80[GIH][hapmap];0.81[MEX][hapmap];0.86[TSI][hapmap];0.82[EUR][1000 genomes]
rs10102566	0.80[CEU][hapmap];0.80[GIH][hapmap];0.85[MEX][hapmap];0.82[TSI][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10106600	0.80[CEU][hapmap]
rs1073178	0.80[CEU][hapmap];0.81[MEX][hapmap];0.86[TSI][hapmap];0.81[EUR][1000 genomes]
rs1075051	0.80[CEU][hapmap];0.81[EUR][1000 genomes]
rs10808530	0.80[CEU][hapmap];0.82[EUR][1000 genomes]
rs10808531	0.82[EUR][1000 genomes]
rs10956163	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs10956164	0.80[CEU][hapmap];0.80[AMR][1000 genomes]
rs11984962	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12375254	1.00[CEU][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.82[TSI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12541155	0.80[CEU][hapmap];0.81[EUR][1000 genomes]
rs12545670	0.88[CEU][hapmap]
rs13251412	0.89[CEU][hapmap]
rs13254252	0.81[EUR][1000 genomes]
rs13254498	0.80[CEU][hapmap];0.82[TSI][hapmap];0.81[EUR][1000 genomes]
rs13258808	0.80[CEU][hapmap];0.85[MEX][hapmap];0.82[TSI][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13261097	0.80[CEU][hapmap]
rs13263969	0.86[CEU][hapmap];0.80[AMR][1000 genomes]
rs13269044	0.80[CEU][hapmap];0.81[MEX][hapmap];0.82[TSI][hapmap]
rs2069078	0.80[CEU][hapmap];0.82[TSI][hapmap];0.81[EUR][1000 genomes]
rs3886123	1.00[CEU][hapmap];0.95[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4242353	0.89[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4294164	0.80[CEU][hapmap];0.82[TSI][hapmap]
rs4330676	0.80[CEU][hapmap];0.80[EUR][1000 genomes]
rs4345538	0.80[CEU][hapmap]
rs4389914	1.00[CEU][hapmap];0.95[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4392878	1.00[CEU][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.86[TSI][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4404895	0.80[CEU][hapmap];0.82[EUR][1000 genomes]
rs4410885	0.82[EUR][1000 genomes]
rs4412351	0.80[CEU][hapmap];0.84[JPT][hapmap];0.80[EUR][1000 genomes]
rs4430074	0.80[CEU][hapmap];0.81[MEX][hapmap];0.82[TSI][hapmap]
rs4460351	0.80[CEU][hapmap];0.82[EUR][1000 genomes]
rs4483140	0.80[CEU][hapmap];0.85[MEX][hapmap];0.86[TSI][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4484683	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4576412	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap];0.81[YRI][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4870886	1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4871451	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.86[TSI][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4871452	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4871453	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.86[TSI][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4871454	1.00[CEU][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4871457	1.00[CEU][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4871458	1.00[CEU][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4871459	1.00[CEU][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4871460	0.80[CEU][hapmap];0.81[MEX][hapmap];0.86[TSI][hapmap];0.82[EUR][1000 genomes]
rs4871461	0.80[CEU][hapmap];0.81[EUR][1000 genomes]
rs4871462	0.80[CEU][hapmap];0.80[AMR][1000 genomes]
rs59583746	0.81[EUR][1000 genomes]
rs6470214	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6470216	0.80[CEU][hapmap];0.81[MEX][hapmap];0.86[TSI][hapmap];0.82[EUR][1000 genomes]
rs6470217	0.82[EUR][1000 genomes]
rs6470218	0.81[EUR][1000 genomes]
rs6470219	0.80[CEU][hapmap];0.82[TSI][hapmap]
rs6470220	0.80[EUR][1000 genomes]
rs6470221	0.80[CEU][hapmap]
rs6983060	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6984093	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.86[TSI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6987082	0.82[EUR][1000 genomes]
rs6991629	0.80[CEU][hapmap];0.82[EUR][1000 genomes]
rs6995745	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7001300	1.00[CEU][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.90[TSI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7003992	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7005123	0.80[CEU][hapmap];0.82[EUR][1000 genomes]
rs7007739	0.80[CEU][hapmap];0.86[TSI][hapmap];0.82[EUR][1000 genomes]
rs7009406	0.80[CEU][hapmap];0.86[TSI][hapmap];0.83[EUR][1000 genomes]
rs7010375	0.80[CEU][hapmap];0.86[TSI][hapmap];0.83[EUR][1000 genomes]
rs7012186	0.80[CEU][hapmap];0.81[MEX][hapmap];0.86[TSI][hapmap];0.82[EUR][1000 genomes]
rs7013226	0.80[CEU][hapmap];0.81[EUR][1000 genomes]
rs7815620	0.80[CEU][hapmap];0.82[TSI][hapmap]
rs7816075	0.82[EUR][1000 genomes]
rs7822018	0.80[CEU][hapmap]
rs7822412	0.80[AMR][1000 genomes]
rs7825506	0.88[CEU][hapmap]
rs7826405	0.80[CEU][hapmap];0.81[EUR][1000 genomes]
rs7831422	1.00[CEU][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.82[MKK][hapmap];0.86[TSI][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7832499	0.80[CEU][hapmap];0.82[TSI][hapmap];0.81[EUR][1000 genomes]
rs7836974	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7840702	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7841692	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7842213	1.00[CEU][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9297683	0.82[EUR][1000 genomes]
rs9297684	0.80[CEU][hapmap];0.82[EUR][1000 genomes]
rs9297685	0.80[CEU][hapmap];0.81[MEX][hapmap];0.86[TSI][hapmap];0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9643188	0.80[CEU][hapmap];0.84[MEX][hapmap];0.82[TSI][hapmap];0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124971800-125052000	Weak transcription	Gastric	stomach
2	chr8:125031000-125048600	Weak transcription	Stomach Mucosa	stomach
3	chr8:125037000-125045600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr8:125040600-125045400	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr8:125040600-125045600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr8:125040800-125045200	Weak transcription	Fetal Heart	heart
7	chr8:125041000-125046200	Weak transcription	Fetal Muscle Leg	muscle
8	chr8:125041000-125048400	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr8:125042000-125044400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr8:125042400-125044200	Enhancers	Primary B cells from peripheral blood	blood
11	chr8:125042600-125044200	Enhancers	Primary hematopoietic stem cells	blood
12	chr8:125042600-125044200	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr8:125042600-125044200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr8:125042800-125043800	Enhancers	K562	blood
15	chr8:125043000-125047000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr8:125043200-125045800	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr8:125043200-125049000	Weak transcription	Psoas Muscle	Psoas
18	chr8:125043400-125045600	Weak transcription	Primary neutrophils fromperipheralblood	blood
19	chr8:125043600-125043800	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr8:125043600-125044400	Flanking Active TSS	GM12878-XiMat	blood
21	chr8:125043600-125051200	Weak transcription	Right Ventricle	heart

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