Variant report

Variant	rs4576412
Chromosome Location	chr8:125051840-125051841
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:125050189..125052613-chr8:125383831..125386587,2	K562	blood:
2	chr8:125049277..125052160-chr8:125383546..125386124,3	MCF-7	breast:
3	chr8:125046543..125048500-chr8:125050991..125052499,2	MCF-7	breast:
4	chr8:125050963..125051899-chr8:125462149..125462696,2	MCF-7	breast:
5	chr8:125051633..125053177-chr8:125461476..125463177,2	MCF-7	breast:
6	chr8:125048985..125052591-chr8:125053625..125056640,3	MCF-7	breast:
7	chr8:125050015..125052629-chr8:125283877..125285443,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000183665	Chromatin interaction
ENSG00000253227	Chromatin interaction
ENSG00000164983	Chromatin interaction

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs10094266	0.83[EUR][1000 genomes]
rs10094533	0.80[CEU][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes]
rs10102566	0.80[CEU][hapmap];0.95[TSI][hapmap];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10106600	0.80[CEU][hapmap];0.80[EUR][1000 genomes]
rs1073178	0.80[CEU][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs1075051	0.80[CEU][hapmap];0.82[EUR][1000 genomes]
rs10808530	0.80[CEU][hapmap];0.83[EUR][1000 genomes]
rs10808531	0.83[EUR][1000 genomes]
rs10956163	0.88[CEU][hapmap];0.85[CHB][hapmap];0.82[EUR][1000 genomes]
rs10956164	0.80[CEU][hapmap];0.80[AMR][1000 genomes]
rs11984962	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12375254	1.00[CEU][hapmap];0.95[JPT][hapmap];0.95[TSI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12541155	0.80[CEU][hapmap];0.82[EUR][1000 genomes]
rs12545670	0.88[CEU][hapmap]
rs13251412	0.89[CEU][hapmap]
rs13254252	0.82[EUR][1000 genomes]
rs13254498	0.80[CEU][hapmap];0.95[TSI][hapmap];0.82[EUR][1000 genomes]
rs13258808	0.80[CEU][hapmap];0.95[TSI][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13261097	0.80[CEU][hapmap]
rs13263969	0.86[CEU][hapmap];0.80[AMR][1000 genomes]
rs13269044	0.80[CEU][hapmap];0.95[TSI][hapmap]
rs2069078	0.80[CEU][hapmap];0.95[TSI][hapmap];0.82[EUR][1000 genomes]
rs3886123	1.00[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4242353	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4294164	0.80[CEU][hapmap];0.95[TSI][hapmap]
rs4311644	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap];0.81[YRI][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4330676	0.80[CEU][hapmap];0.81[EUR][1000 genomes]
rs4345538	0.80[CEU][hapmap];0.80[EUR][1000 genomes]
rs4389914	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4392878	1.00[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.88[LWK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4404895	0.80[CEU][hapmap];0.83[EUR][1000 genomes]
rs4410885	0.83[EUR][1000 genomes]
rs4412351	0.80[CEU][hapmap];0.84[JPT][hapmap];0.81[EUR][1000 genomes]
rs4430074	0.80[CEU][hapmap];0.95[TSI][hapmap]
rs4446721	0.89[TSI][hapmap]
rs4460351	0.80[CEU][hapmap];0.83[EUR][1000 genomes]
rs4483140	0.80[CEU][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4484683	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4510842	0.90[TSI][hapmap];0.80[EUR][1000 genomes]
rs4870886	0.95[CHB][hapmap];0.95[JPT][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4871451	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4871452	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4871453	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4871454	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4871457	1.00[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.88[LWK][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4871458	1.00[CEU][hapmap];0.95[JPT][hapmap];0.95[TSI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4871459	1.00[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4871460	0.80[CEU][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes]
rs4871461	0.80[CEU][hapmap];0.82[EUR][1000 genomes]
rs4871462	0.80[CEU][hapmap];0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs59583746	0.82[EUR][1000 genomes]
rs6470214	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6470216	0.80[CEU][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes]
rs6470217	0.83[EUR][1000 genomes]
rs6470218	0.82[EUR][1000 genomes]
rs6470219	0.80[CEU][hapmap];0.95[TSI][hapmap];0.80[EUR][1000 genomes]
rs6470220	0.81[EUR][1000 genomes]
rs6470221	0.80[CEU][hapmap]
rs6983060	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6984093	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6987082	0.83[EUR][1000 genomes]
rs6991629	0.80[CEU][hapmap];0.83[EUR][1000 genomes]
rs6995745	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7001300	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7003992	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7005123	0.80[CEU][hapmap];0.83[EUR][1000 genomes]
rs7007739	0.80[CEU][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes]
rs7009406	0.80[CEU][hapmap];1.00[TSI][hapmap];0.84[EUR][1000 genomes]
rs7010375	0.80[CEU][hapmap];1.00[TSI][hapmap];0.84[EUR][1000 genomes]
rs7012186	0.80[CEU][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes]
rs7013226	0.80[CEU][hapmap];0.82[EUR][1000 genomes]
rs7815620	0.80[CEU][hapmap];0.95[TSI][hapmap]
rs7816075	0.83[EUR][1000 genomes]
rs7822018	0.80[CEU][hapmap]
rs7822412	0.80[AMR][1000 genomes]
rs7825506	0.88[CEU][hapmap]
rs7826405	0.80[CEU][hapmap];0.82[EUR][1000 genomes]
rs7831422	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7832499	0.80[CEU][hapmap];0.95[TSI][hapmap];0.82[EUR][1000 genomes]
rs7836974	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7840702	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.83[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7841692	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7842213	1.00[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9297683	0.83[EUR][1000 genomes]
rs9297684	0.80[CEU][hapmap];0.83[EUR][1000 genomes]
rs9297685	0.80[CEU][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9643188	0.80[CEU][hapmap];0.95[TSI][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124971800-125052000	Weak transcription	Gastric	stomach
2	chr8:125045200-125053000	Enhancers	Fetal Heart	heart
3	chr8:125046200-125052000	Weak transcription	Fetal Stomach	stomach
4	chr8:125046600-125052000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr8:125047000-125052000	Weak transcription	Primary hematopoietic stem cells	blood
6	chr8:125047000-125052000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr8:125047000-125052200	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr8:125047000-125052200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr8:125047400-125052400	Weak transcription	Primary B cells from peripheral blood	blood
10	chr8:125047400-125052600	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr8:125047400-125053000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr8:125047400-125053400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr8:125048800-125052400	Weak transcription	K562	blood
14	chr8:125050600-125054800	Enhancers	Fetal Intestine Small	intestine
15	chr8:125051200-125052000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr8:125051200-125052200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr8:125051200-125052200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr8:125051200-125052400	Enhancers	Right Ventricle	heart
19	chr8:125051200-125052600	Enhancers	Right Atrium	heart
20	chr8:125051200-125054800	Enhancers	Fetal Intestine Large	intestine
21	chr8:125051400-125053000	Enhancers	Left Ventricle	heart
22	chr8:125051400-125054000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr8:125051400-125054200	Enhancers	Cortex derived primary cultured neurospheres	brain
24	chr8:125051400-125054200	Enhancers	A549	lung
25	chr8:125051400-125054400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr8:125051400-125054400	Enhancers	Fetal Muscle Leg	muscle
27	chr8:125051600-125054400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr8:125051800-125052400	Strong transcription	Stomach Mucosa	stomach
29	chr8:125051800-125052800	Enhancers	ES-I3 Cell Line	embryonic stem cell
30	chr8:125051800-125053000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr8:125051800-125053400	Enhancers	Fetal Kidney	kidney

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