Variant report

Variant	rs4510842
Chromosome Location	chr8:125071760-125071761
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:125066380..125069161-chr8:125069847..125072884,3	MCF-7	breast:

Extended variants
information (count: 98 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:94)

rs_ID	r²[population]
rs10094266	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10094533	0.91[CEU][hapmap];0.90[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.91[TSI][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10102566	0.91[CEU][hapmap];0.89[GIH][hapmap];0.89[JPT][hapmap];0.95[TSI][hapmap];0.96[EUR][1000 genomes]
rs10106600	0.91[CEU][hapmap];0.94[JPT][hapmap];0.94[EUR][1000 genomes]
rs10113693	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10113772	0.89[CEU][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1073178	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1075051	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10808530	0.91[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10808531	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10956163	0.89[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10956164	0.91[CEU][hapmap];0.94[JPT][hapmap];0.93[EUR][1000 genomes]
rs11984962	0.81[EUR][1000 genomes]
rs12375254	0.81[MEX][hapmap];0.87[TSI][hapmap];0.81[EUR][1000 genomes]
rs12541155	0.91[CEU][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12545670	0.89[CEU][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13251412	0.90[CEU][hapmap];0.93[EUR][1000 genomes]
rs13254252	0.90[CEU][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13254498	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.95[TSI][hapmap];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13258808	0.91[CEU][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.95[TSI][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13258930	0.93[EUR][1000 genomes]
rs13261097	0.91[CEU][hapmap];0.93[EUR][1000 genomes]
rs13263969	0.88[CEU][hapmap];0.93[EUR][1000 genomes]
rs13269044	0.91[CEU][hapmap];1.00[GIH][hapmap];0.95[TSI][hapmap];0.91[EUR][1000 genomes]
rs2069078	0.91[CEU][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.95[TSI][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3886123	0.81[EUR][1000 genomes]
rs4242353	0.80[EUR][1000 genomes]
rs4294164	0.91[CEU][hapmap];0.86[CHB][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.81[MEX][hapmap];0.95[TSI][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4330676	0.91[CEU][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4345538	0.91[CEU][hapmap];0.94[EUR][1000 genomes]
rs4389914	0.80[EUR][1000 genomes]
rs4392878	0.81[MEX][hapmap];0.91[TSI][hapmap];0.81[EUR][1000 genomes]
rs4404895	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4410885	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4412351	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4430074	0.91[CEU][hapmap];1.00[GIH][hapmap];0.95[TSI][hapmap];0.90[EUR][1000 genomes]
rs4446721	0.89[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap]
rs4460351	0.91[CEU][hapmap];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4483139	0.90[ASN][1000 genomes]
rs4483140	0.91[CEU][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.91[TSI][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4484683	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4500064	0.81[ASN][1000 genomes]
rs4576412	0.90[TSI][hapmap];0.80[EUR][1000 genomes]
rs4870886	0.80[EUR][1000 genomes]
rs4871451	0.91[TSI][hapmap]
rs4871452	0.91[TSI][hapmap];0.80[EUR][1000 genomes]
rs4871453	0.81[MEX][hapmap];0.91[TSI][hapmap];0.81[EUR][1000 genomes]
rs4871454	0.91[TSI][hapmap];0.80[EUR][1000 genomes]
rs4871457	0.91[TSI][hapmap];0.81[EUR][1000 genomes]
rs4871458	0.87[TSI][hapmap];0.80[EUR][1000 genomes]
rs4871459	0.80[EUR][1000 genomes]
rs4871460	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.82[MKK][hapmap];0.91[TSI][hapmap];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4871461	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4871462	0.91[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.94[EUR][1000 genomes]
rs59583746	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6470214	0.80[EUR][1000 genomes]
rs6470216	0.91[CEU][hapmap];0.90[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6470217	0.95[EUR][1000 genomes]
rs6470218	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6470219	0.91[CEU][hapmap];0.86[CHB][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.86[MEX][hapmap];0.95[TSI][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6470220	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6470221	0.91[CEU][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6983060	0.80[EUR][1000 genomes]
rs6984093	0.81[MEX][hapmap];0.91[TSI][hapmap];0.81[EUR][1000 genomes]
rs6987082	0.82[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6991629	0.91[CEU][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6995745	0.80[EUR][1000 genomes]
rs7001300	0.81[MEX][hapmap];0.87[TSI][hapmap];0.80[EUR][1000 genomes]
rs7003992	0.81[EUR][1000 genomes]
rs7005123	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7007739	1.00[ASW][hapmap];1.00[CEU][hapmap];0.82[CHB][hapmap];0.80[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.96[MKK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7009406	0.83[ASW][hapmap];0.91[CEU][hapmap];0.89[JPT][hapmap];0.91[MEX][hapmap];0.91[TSI][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7010375	0.83[ASW][hapmap];0.91[CEU][hapmap];0.80[GIH][hapmap];0.89[JPT][hapmap];0.90[LWK][hapmap];0.91[MEX][hapmap];0.84[MKK][hapmap];0.91[TSI][hapmap];0.83[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7012186	0.91[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7013226	0.91[CEU][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7815620	0.91[CEU][hapmap];1.00[GIH][hapmap];0.81[MEX][hapmap];0.95[TSI][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7815768	0.93[EUR][1000 genomes]
rs7816075	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7822018	0.91[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.91[EUR][1000 genomes]
rs7822412	0.86[EUR][1000 genomes]
rs7822557	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7825506	0.89[CEU][hapmap];0.93[EUR][1000 genomes]
rs7826405	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7827412	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7831422	0.91[TSI][hapmap];0.80[EUR][1000 genomes]
rs7832499	0.91[CEU][hapmap];0.86[CHB][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.81[MEX][hapmap];0.82[MKK][hapmap];0.95[TSI][hapmap];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7836974	0.96[EUR][1000 genomes]
rs7840702	0.81[EUR][1000 genomes]
rs7841692	0.80[EUR][1000 genomes]
rs7842213	0.80[EUR][1000 genomes]
rs9297683	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9297684	0.91[CEU][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9297685	0.91[CEU][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.91[TSI][hapmap];0.95[EUR][1000 genomes]
rs9643188	0.91[CEU][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv6375	chr8:125056543-125087258	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv612144	chr8:125057728-125206503	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1023183	chr8:125060532-125206445	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv948556	chr8:125067187-125204721	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125052600-125083600	Weak transcription	Gastric	stomach
2	chr8:125064400-125078600	Weak transcription	Stomach Mucosa	stomach
3	chr8:125068400-125072800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr8:125070800-125072200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr8:125070800-125072600	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr8:125071000-125074800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr8:125071600-125074400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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