Variant report

Variant	rs4871452
Chromosome Location	chr8:125050335-125050336
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:17)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:17 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:125049632..125050675-chr8:125437225..125438451,4	K562	blood:
2	chr8:125050107..125050678-chr8:125186177..125186793,3	MCF-7	breast:
3	chr8:125049707..125050529-chr8:125160147..125160863,2	MCF-7	breast:
4	chr8:125050189..125052613-chr8:125383831..125386587,2	K562	blood:
5	chr8:125049724..125050607-chr8:125439604..125440436,2	MCF-7	breast:
6	chr8:125049687..125050407-chr8:125194679..125195202,2	MCF-7	breast:
7	chr8:125049791..125050531-chr8:125452372..125453241,4	MCF-7	breast:
8	chr8:125049277..125052160-chr8:125383546..125386124,3	MCF-7	breast:
9	chr8:125049391..125051074-chr8:125436877..125438920,32	MCF-7	breast:
10	chr8:125049717..125050652-chr8:125437138..125438607,13	MCF-7	breast:
11	chr8:125049184..125051172-chr8:125383872..125385592,14	MCF-7	breast:
12	chr8:125049870..125050584-chr8:125244581..125245169,2	MCF-7	breast:
13	chr8:125049737..125050909-chr8:125384988..125386022,4	MCF-7	breast:
14	chr8:125048985..125052591-chr8:125053625..125056640,3	MCF-7	breast:
15	chr8:125049009..125051707-chr8:125273517..125275708,2	MCF-7	breast:
16	chr8:124936424..124937127-chr8:125049695..125050484,2	MCF-7	breast:
17	chr8:125050015..125052629-chr8:125283877..125285443,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000164983	Chromatin interaction
ENSG00000253227	Chromatin interaction

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs10094266	0.83[EUR][1000 genomes]
rs10094533	0.80[CEU][hapmap];0.80[GIH][hapmap];0.81[MEX][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes]
rs10102566	0.80[CEU][hapmap];0.80[GIH][hapmap];0.85[MEX][hapmap];0.95[TSI][hapmap];0.82[EUR][1000 genomes]
rs10106600	0.80[CEU][hapmap];0.80[EUR][1000 genomes]
rs1073178	0.80[CEU][hapmap];0.81[MEX][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs1075051	0.80[CEU][hapmap];0.82[EUR][1000 genomes]
rs10808530	0.80[CEU][hapmap];0.83[EUR][1000 genomes]
rs10808531	0.83[EUR][1000 genomes]
rs10956163	0.88[CEU][hapmap];0.84[CHB][hapmap];0.82[EUR][1000 genomes]
rs10956164	0.80[CEU][hapmap]
rs11984962	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12375254	1.00[CEU][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12541155	0.80[CEU][hapmap];0.82[EUR][1000 genomes]
rs12545670	0.88[CEU][hapmap]
rs13251412	0.89[CEU][hapmap]
rs13254252	0.82[EUR][1000 genomes]
rs13254498	0.80[CEU][hapmap];0.95[TSI][hapmap];0.82[EUR][1000 genomes]
rs13258808	0.80[CEU][hapmap];0.85[MEX][hapmap];0.95[TSI][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13261097	0.80[CEU][hapmap]
rs13263969	0.86[CEU][hapmap]
rs13269044	0.80[CEU][hapmap];0.81[MEX][hapmap];0.95[TSI][hapmap]
rs2069078	0.80[CEU][hapmap];0.95[TSI][hapmap];0.82[EUR][1000 genomes]
rs3886123	1.00[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4242353	0.89[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4294164	0.80[CEU][hapmap];0.95[TSI][hapmap]
rs4311644	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4330676	0.80[CEU][hapmap];0.81[EUR][1000 genomes]
rs4345538	0.80[CEU][hapmap];0.80[EUR][1000 genomes]
rs4389914	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4392878	1.00[CEU][hapmap];0.87[CHB][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4404895	0.80[CEU][hapmap];0.83[EUR][1000 genomes]
rs4410885	0.83[EUR][1000 genomes]
rs4412351	0.80[CEU][hapmap];0.84[JPT][hapmap];0.81[EUR][1000 genomes]
rs4430074	0.80[CEU][hapmap];0.81[MEX][hapmap];0.95[TSI][hapmap]
rs4446721	0.91[TSI][hapmap]
rs4460351	0.80[CEU][hapmap];0.83[EUR][1000 genomes]
rs4483140	0.80[CEU][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4484683	0.83[EUR][1000 genomes]
rs4510842	0.91[TSI][hapmap];0.80[EUR][1000 genomes]
rs4576412	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4870886	0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4871451	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4871453	1.00[CEU][hapmap];0.83[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4871454	1.00[CEU][hapmap];0.88[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4871457	1.00[CEU][hapmap];0.87[CHB][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4871458	1.00[CEU][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4871459	1.00[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4871460	0.80[CEU][hapmap];0.81[MEX][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes]
rs4871461	0.80[CEU][hapmap];0.82[EUR][1000 genomes]
rs4871462	0.80[CEU][hapmap];0.80[EUR][1000 genomes]
rs59583746	0.82[EUR][1000 genomes]
rs6470214	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6470216	0.80[CEU][hapmap];0.81[MEX][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes]
rs6470217	0.83[EUR][1000 genomes]
rs6470218	0.82[EUR][1000 genomes]
rs6470219	0.80[CEU][hapmap];0.95[TSI][hapmap];0.80[EUR][1000 genomes]
rs6470220	0.81[EUR][1000 genomes]
rs6470221	0.80[CEU][hapmap]
rs6983060	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6984093	1.00[CEU][hapmap];0.95[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6987082	0.83[EUR][1000 genomes]
rs6991629	0.80[CEU][hapmap];0.83[EUR][1000 genomes]
rs6995745	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7001300	1.00[CEU][hapmap];0.80[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7003992	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7005123	0.80[CEU][hapmap];0.83[EUR][1000 genomes]
rs7007739	0.80[CEU][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes]
rs7009406	0.80[CEU][hapmap];1.00[TSI][hapmap];0.84[EUR][1000 genomes]
rs7010375	0.80[CEU][hapmap];1.00[TSI][hapmap];0.84[EUR][1000 genomes]
rs7012186	0.80[CEU][hapmap];0.81[MEX][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes]
rs7013226	0.80[CEU][hapmap];0.82[EUR][1000 genomes]
rs7815620	0.80[CEU][hapmap];0.95[TSI][hapmap]
rs7816075	0.83[EUR][1000 genomes]
rs7822018	0.80[CEU][hapmap]
rs7825506	0.88[CEU][hapmap]
rs7826405	0.80[CEU][hapmap];0.82[EUR][1000 genomes]
rs7831422	1.00[CEU][hapmap];0.90[CHB][hapmap];0.84[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7832499	0.80[CEU][hapmap];0.95[TSI][hapmap];0.82[EUR][1000 genomes]
rs7836974	0.82[EUR][1000 genomes]
rs7840702	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7841692	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7842213	1.00[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9297683	0.83[EUR][1000 genomes]
rs9297684	0.80[CEU][hapmap];0.83[EUR][1000 genomes]
rs9297685	0.80[CEU][hapmap];0.81[MEX][hapmap];1.00[TSI][hapmap];0.81[EUR][1000 genomes]
rs9643188	0.80[CEU][hapmap];0.84[MEX][hapmap];0.95[TSI][hapmap];0.83[EUR][1000 genomes]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124971800-125052000	Weak transcription	Gastric	stomach
2	chr8:125043600-125051200	Weak transcription	Right Ventricle	heart
3	chr8:125045200-125053000	Enhancers	Fetal Heart	heart
4	chr8:125046200-125051200	Weak transcription	Right Atrium	heart
5	chr8:125046200-125052000	Weak transcription	Fetal Stomach	stomach
6	chr8:125046600-125051600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr8:125046600-125052000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr8:125047000-125051200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr8:125047000-125051200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr8:125047000-125051400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr8:125047000-125052000	Weak transcription	Primary hematopoietic stem cells	blood
12	chr8:125047000-125052000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr8:125047000-125052200	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr8:125047000-125052200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr8:125047400-125052400	Weak transcription	Primary B cells from peripheral blood	blood
16	chr8:125047400-125052600	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr8:125047400-125053000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr8:125047400-125053400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr8:125048400-125050600	Weak transcription	Fetal Intestine Small	intestine
20	chr8:125048800-125052400	Weak transcription	K562	blood
21	chr8:125049000-125050600	Enhancers	Fetal Muscle Leg	muscle
22	chr8:125049000-125051800	Weak transcription	Stomach Mucosa	stomach
23	chr8:125049400-125050800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr8:125050000-125050600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
25	chr8:125050000-125051400	Weak transcription	Left Ventricle	heart
26	chr8:125050200-125051400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links