Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:168145007..168147502-chr2:168153038..168154565,2	K562	blood:

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10193480	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10497323	0.93[CEU][hapmap];0.86[JPT][hapmap];0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12611980	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12612028	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1357598	0.88[EUR][1000 genomes]
rs1564384	0.81[ASN][1000 genomes]
rs16853244	0.88[CEU][hapmap]
rs1842233	0.93[CEU][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs2177440	0.86[EUR][1000 genomes]
rs2204279	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60477253	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60988732	0.91[EUR][1000 genomes]
rs61036436	0.91[EUR][1000 genomes]
rs6432989	0.88[CEU][hapmap]
rs6708386	0.87[CEU][hapmap];0.87[JPT][hapmap];0.81[ASN][1000 genomes]
rs6746061	0.88[CEU][hapmap]
rs73029721	0.80[EUR][1000 genomes]
rs7560985	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7564986	0.88[CEU][hapmap];0.80[EUR][1000 genomes]
rs7569158	0.88[CEU][hapmap]
rs7602119	0.93[CEU][hapmap]
rs7603500	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7605309	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9784125	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875377	chr2:168084857-168203116	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv875378	chr2:168107491-168297961	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	esv3364733	chr2:168109919-168302141	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv1008704	chr2:168153525-168196371	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:168151400-168163600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr2:168152000-168155600	Weak transcription	Brain Anterior Caudate	brain
3	chr2:168152000-168174400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr2:168152600-168160400	Weak transcription	Psoas Muscle	Psoas
5	chr2:168152600-168167000	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr2:168152800-168155800	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr2:168153000-168155000	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr2:168153200-168154600	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr2:168153200-168155000	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr2:168153400-168154600	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr2:168153600-168154600	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr2:168153800-168154200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr2:168154000-168154200	Enhancers	H1 Cell Line	embryonic stem cell
14	chr2:168154000-168154200	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr2:168154000-168154400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

Quick Search: