Variant report

Variant	rs61036436
Chromosome Location	chr2:168138854-168138855
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10193480	0.88[EUR][1000 genomes]
rs12611980	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12612028	0.85[EUR][1000 genomes]
rs1357598	0.89[EUR][1000 genomes]
rs2177440	0.87[EUR][1000 genomes]
rs2204279	0.95[EUR][1000 genomes]
rs4315485	0.91[EUR][1000 genomes]
rs60477253	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs60988732	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73029721	0.85[EUR][1000 genomes]
rs7560985	0.92[EUR][1000 genomes]
rs7564986	0.85[EUR][1000 genomes]
rs7603500	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7605309	0.93[EUR][1000 genomes]
rs9784125	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875377	chr2:168084857-168203116	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv979347	chr2:168092753-168141678	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases
3	nsv875378	chr2:168107491-168297961	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	esv3364733	chr2:168109919-168302141	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:168133000-168143600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr2:168134200-168139200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr2:168134800-168139400	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr2:168135000-168139000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr2:168136800-168139600	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr2:168138000-168139400	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr2:168138200-168139200	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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