Variant report

Variant	rs7603500
Chromosome Location	chr2:168140127-168140128
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:168135885..168137977-chr2:168139008..168140759,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10193480	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10497323	0.93[CEU][hapmap];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12611980	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12612028	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1357598	0.93[EUR][1000 genomes]
rs1564384	0.83[EUR][1000 genomes]
rs16853244	0.88[CEU][hapmap];0.83[EUR][1000 genomes]
rs1842233	0.93[CEU][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2177440	0.91[EUR][1000 genomes]
rs2204279	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4315485	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57543537	0.83[EUR][1000 genomes]
rs60477253	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60988732	0.96[EUR][1000 genomes]
rs61036436	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6432989	0.88[CEU][hapmap];0.83[EUR][1000 genomes]
rs6708386	0.87[CEU][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6746061	0.88[CEU][hapmap];0.83[EUR][1000 genomes]
rs73029721	0.85[EUR][1000 genomes]
rs7419512	0.83[EUR][1000 genomes]
rs7556840	0.83[EUR][1000 genomes]
rs7560985	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7564986	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs7569158	0.88[CEU][hapmap];0.83[EUR][1000 genomes]
rs7602065	0.81[EUR][1000 genomes]
rs7602119	0.93[CEU][hapmap];0.83[EUR][1000 genomes]
rs7605309	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9784125	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875377	chr2:168084857-168203116	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv979347	chr2:168092753-168141678	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases
3	nsv875378	chr2:168107491-168297961	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	esv3364733	chr2:168109919-168302141	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:168133000-168143600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links