Variant report

Variant	rs4324765
Chromosome Location	chr6:11398113-11398114
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:11396064..11399493-chr6:11408571..11410714,3	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs4598071	0.91[EUR][1000 genomes]
rs4713464	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4713484	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4713485	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6457449	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs738271	0.96[CEU][hapmap];0.91[CHB][hapmap];0.82[YRI][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7750329	0.96[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];0.80[YRI][hapmap];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7775262	0.96[CEU][hapmap];0.91[CHB][hapmap];0.85[JPT][hapmap];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9357126	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9394069	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9394071	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9469025	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9766767	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv432848	chr6:11371614-11560114	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11393600-11398600	Weak transcription	Adipose Nuclei	Adipose
2	chr6:11394000-11405600	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr6:11394200-11398800	Weak transcription	Fetal Lung	lung
4	chr6:11394800-11398600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:11394800-11398600	Weak transcription	Fetal Kidney	kidney
6	chr6:11394800-11403600	Weak transcription	Primary B cells from cord blood	blood
7	chr6:11395000-11398600	Weak transcription	A549	lung
8	chr6:11395000-11398800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr6:11395200-11398800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr6:11396000-11398400	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr6:11397400-11400200	Enhancers	Fetal Intestine Large	intestine
12	chr6:11397600-11400000	Enhancers	Fetal Intestine Small	intestine
13	chr6:11397800-11399600	Enhancers	Monocytes-CD14+_RO01746	blood
14	chr6:11397800-11400000	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr6:11398000-11398200	Flanking Active TSS	HepG2	liver
16	chr6:11398000-11398400	Enhancers	Primary B cells from peripheral blood	blood
17	chr6:11398000-11398400	Enhancers	GM12878-XiMat	blood
18	chr6:11398000-11398800	Enhancers	Lung	lung
19	chr6:11398000-11398800	Enhancers	Spleen	Spleen
20	chr6:11398000-11399000	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr6:11398000-11399000	Enhancers	Rectal Mucosa Donor 31	rectum
22	chr6:11398000-11399200	Enhancers	Liver	Liver
23	chr6:11398000-11399400	Enhancers	Primary neutrophils fromperipheralblood	blood

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