Variant report

Variant	rs4713484
Chromosome Location	chr6:11401291-11401292
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs4324765	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4598071	0.90[EUR][1000 genomes]
rs4713464	0.84[EUR][1000 genomes]
rs4713485	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6457449	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs738271	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7750329	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7775262	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9357126	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9394069	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9394071	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9469025	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9766767	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv432848	chr6:11371614-11560114	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11394000-11405600	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr6:11394800-11403600	Weak transcription	Primary B cells from cord blood	blood
3	chr6:11398400-11402800	Weak transcription	Primary B cells from peripheral blood	blood
4	chr6:11398800-11403400	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr6:11398800-11405200	Weak transcription	Spleen	Spleen
6	chr6:11399000-11403600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr6:11399000-11410800	Weak transcription	Adipose Nuclei	Adipose
8	chr6:11399400-11402400	Enhancers	HepG2	liver
9	chr6:11399400-11403600	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr6:11399600-11403200	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr6:11400000-11403200	Weak transcription	Primary monocytes fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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