Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:11385040..11387245-chr6:11401910..11404147,2	K562	blood:

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs4324765	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4598071	0.87[EUR][1000 genomes]
rs4713464	0.80[EUR][1000 genomes]
rs4713484	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4713485	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6457459	0.85[CHB][hapmap]
rs738271	0.96[CEU][hapmap];0.91[TSI][hapmap];0.84[EUR][1000 genomes]
rs7750329	0.96[CEU][hapmap];0.91[EUR][1000 genomes]
rs7768684	0.98[ASN][1000 genomes]
rs7772068	1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.81[MEX][hapmap];0.96[MKK][hapmap];0.86[YRI][hapmap];0.82[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7775262	0.96[CEU][hapmap];0.93[TSI][hapmap];0.91[EUR][1000 genomes]
rs9296006	0.85[CHB][hapmap]
rs9296007	0.85[CHB][hapmap]
rs9366787	1.00[CHB][hapmap];0.93[CHD][hapmap];0.93[GIH][hapmap];0.80[MEX][hapmap];0.98[ASN][1000 genomes]
rs9368702	0.85[CHB][hapmap]
rs9380273	0.85[CHB][hapmap]
rs9380274	0.85[CHB][hapmap]
rs9394069	0.80[EUR][1000 genomes]
rs9394079	0.98[ASN][1000 genomes]
rs9394080	0.85[CHB][hapmap]
rs9469025	0.91[EUR][1000 genomes]
rs9469061	0.98[ASN][1000 genomes]
rs9469070	1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.88[MKK][hapmap];0.98[ASN][1000 genomes]
rs9766767	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv432848	chr6:11371614-11560114	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11394000-11405600	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr6:11398800-11405200	Weak transcription	Spleen	Spleen
3	chr6:11399000-11410800	Weak transcription	Adipose Nuclei	Adipose
4	chr6:11402800-11406800	Enhancers	Primary B cells from peripheral blood	blood
5	chr6:11403200-11405200	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr6:11403200-11406600	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr6:11403400-11404200	Enhancers	GM12878-XiMat	blood
8	chr6:11403400-11405400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr6:11403600-11404200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr6:11403600-11404800	Enhancers	Aorta	Aorta
11	chr6:11403600-11404800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
12	chr6:11403600-11405600	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr6:11403600-11406600	Enhancers	Primary B cells from cord blood	blood
14	chr6:11403600-11406600	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr6:11403600-11406800	Enhancers	Primary hematopoietic stem cells	blood
16	chr6:11403800-11404400	Enhancers	Placenta	Placenta
17	chr6:11403800-11407000	Weak transcription	Lung	lung
18	chr6:11404000-11404200	Weak transcription	Primary neutrophils fromperipheralblood	blood
19	chr6:11404000-11405200	Weak transcription	Fetal Kidney	kidney

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