Variant report

Variant	rs4335018
Chromosome Location	chr6:119399508-119399509
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:119253238..119258280-chr6:119398045..119402661,8	K562	blood:
2	chr6:119398174..119401168-chr6:119668507..119671059,2	K562	blood:
3	chr6:119213805..119216904-chr6:119398441..119401842,5	K562	blood:
4	chr6:119340150..119341982-chr6:119399183..119401577,2	K562	blood:
5	chr6:119253156..119256806-chr6:119394976..119399977,7	K562	blood:

Variant related genes	Relation type
ENSG00000111885	Chromatin interaction
ENSG00000253194	Chromatin interaction
ENSG00000111877	Chromatin interaction
ENSG00000111879	Chromatin interaction
ENSG00000111875	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs59123354	0.85[AFR][1000 genomes]
rs73531378	0.90[AFR][1000 genomes]
rs9489587	0.85[AFR][1000 genomes]
rs9885891	0.85[AFR][1000 genomes]
rs9885892	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030400	chr6:119320153-119433830	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119397400-119400800	Active TSS	Brain Inferior Temporal Lobe	brain
2	chr6:119398000-119400600	Active TSS	Colon Smooth Muscle	Colon
3	chr6:119398000-119400800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
4	chr6:119398000-119401000	Active TSS	Breast Myoepithelial Primary Cells	Breast
5	chr6:119398200-119400200	Active TSS	Placenta	Placenta
6	chr6:119398200-119400400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
7	chr6:119398200-119400600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
8	chr6:119398200-119400600	Active TSS	Rectal Smooth Muscle	rectum
9	chr6:119398200-119400800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
10	chr6:119398200-119400800	Active TSS	Rectal Mucosa Donor 29	rectum
11	chr6:119398400-119400400	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr6:119398400-119400600	Active TSS	Brain Hippocampus Middle	brain
13	chr6:119398400-119400600	Active TSS	Duodenum Smooth Muscle	Duodenum
14	chr6:119398400-119400600	Active TSS	Fetal Intestine Small	intestine
15	chr6:119398400-119400800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
16	chr6:119398400-119401000	Active TSS	Ovary	ovary
17	chr6:119398400-119401200	Active TSS	Stomach Smooth Muscle	stomach
18	chr6:119398600-119399600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr6:119398600-119401000	Active TSS	Right Atrium	heart
20	chr6:119398800-119400000	Bivalent/Poised TSS	GM12878-XiMat	blood
21	chr6:119398800-119400200	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
22	chr6:119398800-119400200	Active TSS	H9 Cell Line	embryonic stem cell
23	chr6:119398800-119400200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr6:119398800-119400200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr6:119398800-119400400	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr6:119398800-119400800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr6:119398800-119400800	Active TSS	Fetal Kidney	kidney
28	chr6:119398800-119401000	Active TSS	Pancreatic Islets	Pancreatic Islet
29	chr6:119399000-119399600	Flanking Bivalent TSS/Enh	Primary monocytes fromperipheralblood	blood
30	chr6:119399000-119399600	Flanking Bivalent TSS/Enh	Primary neutrophils fromperipheralblood	blood
31	chr6:119399000-119399600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
32	chr6:119399000-119399600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr6:119399000-119399600	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr6:119399000-119399600	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr6:119399000-119399600	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr6:119399000-119399600	Flanking Bivalent TSS/Enh	HUVEC	blood vessel
37	chr6:119399000-119399600	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
38	chr6:119399000-119399600	Flanking Bivalent TSS/Enh	NHLF	lung
39	chr6:119399000-119399800	Flanking Bivalent TSS/Enh	HMEC	breast
40	chr6:119399000-119400000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
41	chr6:119399000-119400200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
42	chr6:119399000-119400200	Bivalent/Poised TSS	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr6:119399000-119400200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr6:119399000-119400200	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
45	chr6:119399000-119400200	Active TSS	Cortex derived primary cultured neurospheres	brain
46	chr6:119399000-119400400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr6:119399000-119400400	Active TSS	Primary T killer memory cells from peripheral blood	blood
48	chr6:119399000-119400400	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr6:119399000-119400600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
50	chr6:119399000-119400600	Active TSS	Brain Cingulate Gyrus	brain

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