Variant report

Variant	rs9489587
Chromosome Location	chr6:119402455-119402456
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1334927	1.00[EUR][1000 genomes]
rs4335018	0.85[AFR][1000 genomes]
rs58340913	1.00[EUR][1000 genomes]
rs59123354	0.90[AFR][1000 genomes]
rs73531378	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73531393	0.93[EUR][1000 genomes]
rs73531398	0.93[EUR][1000 genomes]
rs73533310	0.81[AFR][1000 genomes]
rs73533328	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9489586	1.00[EUR][1000 genomes]
rs9489589	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9885701	1.00[EUR][1000 genomes]
rs9885891	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9885892	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030400	chr6:119320153-119433830	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119400600-119402800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:119402200-119403200	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr6:119402400-119402600	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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